Cupriavidus sp. KK10: KB879_31825 Help Entry KB879_31825       CDS       T08941                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism cuk  Cupriavidus sp. KK10 Pathway cuk03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cuk00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     KB879_31825 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cuk03400]     KB879_31825 (ligD) Enzymes [BR:cuk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      KB879_31825 (ligD) DNA repair and recombination proteins [BR:cuk03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      KB879_31825 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  QUN32307 LinkDB All DBs Position p1:135890..138412 Genome browser AA seq 840 aa AA seqDB search MAMTPGTSKARARTAERLPNLDRYQKKRNFSVTSEPAGTRQRLQQANPLRFVVQKHWARR LHYDFRLELDGVLLSWAVPKGPSYDPSEKRIAVHVEDHPLDYANFEGEIPAKQYGAGSVI VWDRGTWEPIGDPHEGMAAGKLLFDLYGEKLAGRWELVRIAKPGDQSEQWILFKKRDAWA RPLAEFDVLAALPDSVIAKPLGTLTQTSQGSTEMASDSAITDAPLAPLPAKLGPQLANPA PALPTGTGWVIETKFDGYRILARISDARVTLFTRNGHDWTRMLRSLAAEIEKLDISEGWL DGEIVVLRDGMPDFNALQNAIDGHRSDAIVFFAFDLPFWEGRDLRNVPLAQRRAKLAELV GDRSERVRFSEAFDAPPAQIFQAACQLGLEGLMFKRADASYVSARTQTWLKAKCKLRQEF VIGGFSDRSGAAAEVGKLLLGVYAHRELRYVGGVGTGWDSATATELRRRLAALEVDRSPF STEAHSSRRWGGGREAAVRWVKPTLVAEVEFSDWTPEGQVRQASFKGLRADHPAKSIRRE AIQTTVTPHGVSAIKVTNPDRVIDKSTGITKVELVRYYESVAERMLPHLKDRPLSLVRAP DGIDAPTFFQKHAETAMPGLTEQPQSLWPGHAALLTADSAEAIVAAAQMNAVEFHTWNST ARHIACPDRVIFDLDPGEGIAWETMVEAAMLVRTLLDELGLQSWLKTSGGKGLHVAVPLA PQRSYDEVKAFSRAAVKHLAATLPQRFTARSGAANRKGRIFVDYLRNGFSQTTAAAFSAR ARPGLGVSMPVSWEQLTKLKSGAQWTIRDAREYLSFQVADPWQSYWEARQSLTAAIERLS NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt atggcaatgaccccagggacgtcaaaggctagagctcgcactgcagagcgattgcccaac ctcgaccgctatcagaagaagcgcaacttcagcgtcacttcagagccggcgggaacacga cagcggctccaacaggccaatccgttacgcttcgtggtccagaagcattgggcacggcgg ctgcactacgacttccggcttgaactcgatggtgtgctgctcagttgggcagtgcccaag ggccctagctacgatcccagcgaaaagcgcatcgcggtccatgtggaggaccacccgctc gactatgccaattttgagggagagatcccggccaaacagtatggcgccggctcggtgatc gtctgggatcgtggcacgtgggagccaatcggcgatccgcatgaaggtatggccgcaggc aagttgctcttcgacctgtatggagaaaagctggcaggccgttgggaactggtacgcatc gccaagcccggtgaccaatcagaacagtggatcctgttcaagaagcgagatgcctgggcg cgaccactggcggagttcgacgtgttggcagctttgccggatagcgtcatcgcaaagcca ctgggtacgctgactcagacgtcacagggctcaaccgaaatggcttccgattccgccatc acggacgccccgctcgcccccttgccggctaagctcgggccacagcttgcgaacccggca cccgcacttccgactggtaccgggtgggtcatcgaaaccaagttcgacggctatcgcatc ctggccaggatctccgacgcccgggtgacgctctttacccgcaatgggcatgactggacc cggatgctgcgttcgctggccgcggagatcgagaagctcgacatctcggaaggctggctg gacggcgagatcgtcgtgctgcgcgatggcatgccagatttcaatgccttgcagaacgcc atcgacgggcatcgcagcgacgcaatcgtcttcttcgccttcgatctacccttctgggaa ggccgggatttgcgcaacgtgcccctggcccagcgtcgggctaagctggcggagcttgtc ggagatcgctccgaacgcgtgcgctttagcgaggccttcgatgcccccccggcgcagatc ttccaggcggcgtgccagctcggtctcgaaggcttgatgttcaagcgggcggacgcctcc tatgtttccgcgcgcacgcagacgtggctgaaggccaaatgcaaactgcgtcaggagttt gtgattggcgggttctcggaccgcagtggtgcggcagccgaggtaggcaagctattgctt ggtgtgtatgcgcacagggaactccgttacgtcggcggcgttggaaccggctgggacagc gcgacggcgacagagctcaggaggcgcttggccgccttggaggttgaccgaagtcccttt tcgacggaggcgcattccagccggcgatggggtggaggtcgagaagccgctgtgcgttgg gtaaaacccaccctcgttgcagaagtcgagttttccgattggacccctgaaggccaggtg cgtcaagcctcgttcaaaggcctgcgcgccgatcatccagctaagtcgatccggcgagag gcgatccagactaccgtgacgccgcacggtgtgagcgccatcaaggtcaccaatccggac cgtgtcatcgacaaatccacagggatcacgaaggtcgagttggttcgctactacgagagc gtggcggagcggatgctgccccacctcaaagatcggccgctatccttggtgcgcgcgccg gatggcattgatgcgccgacgttctttcagaagcacgcggaaacggcgatgcccggcctc accgagcaaccccaatccctttggcccggccatgccgcattactcactgctgattcggca gaagcaatcgtcgccgctgcccagatgaatgcggttgagtttcatacgtggaattcgaca gcccgccacatagcgtgtcccgaccgagtcattttcgacctcgatcctggcgaagggatt gcatgggagacgatggtcgaagccgccatgctggtgcgcacgctgctggatgaactgggg ctgcagtcctggttgaaaacgagcggtggcaaggggctgcacgtcgccgtgccactggcg ccgcagcgttcctacgacgaagtgaaggcgttttcgcgggccgccgtcaagcacttggcg gccaccctgccccagcgcttcaccgcccgctccggggcggccaaccgcaaggggcggatt ttcgtggattatctgcgcaacggcttctcgcaaaccaccgcagccgcgttctcggcgcga gcgcggccaggactcggtgtctccatgccggtgtcctgggagcagcttaccaagctgaaa agtggcgcacagtggactatccgcgacgcccgggaatacctcagtttccaagtggcggat ccctggcagtcttactgggaggcacgccaaagtttgaccgccgccatcgaacgattaagc tga

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