Corynebacterium ulcerans BR-AD22: CULC22_01335
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Entry
CULC22_01335 CDS
T01549
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cul
Corynebacterium ulcerans BR-AD22
Brite
KEGG Orthology (KO) [BR:
cul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cul03019
]
CULC22_01335 (hrpA)
Enzymes [BR:
cul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CULC22_01335 (hrpA)
Messenger RNA biogenesis [BR:
cul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CULC22_01335 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_11
nSTAND3
HA2_N
AAA_30
ResIII
NACHT
PhoH
SLFN-g3_helicase
TsaE
AAA_16
AAA_23
ABC_tran
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEG84045
LinkDB
All DBs
Position
1478003..1482058
Genome browser
AA seq
1351 aa
AA seq
DB search
MYSTVEVLLPNRAKYHGQEMSTAKHQPRDNNNVDTNAIPATPKKQRHSTASFRPDAELRS
AKKSLRTKLNQVSIAEERVFLRRIHKASSMGAIKAITNDIDQAQATLLQRTANIPAVTFP
ENLPVSSQRDAIAEAITNNQVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLA
ARTVAERIAEELGQKIGDSVGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTI
IIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAQHFSDAHGNPAPIIEV
SGRTYPVEILYRPLELSEGEKLIDVDPIDGLIQAIQELMGYGPGDILCFFAGEADIREAM
DAIEAKRWKNVEVTPLFGRLSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHFVVDTG
TARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVTDGIAIRLYSQQDFESRPEFTDPE
ILRTNLASVILRMASLKLGDIENFPFIQAPDTRAIRDGFLLLKELGALTESDQEDSLRLT
TVGRSLAKIPLDPRLARMLIAAEEYGCLREAYIVVAALSIQDIRERPLEKQSQADQLHAR
FKDTSSDFLSYLKLWEYIAEKRAELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQ
IGWTNPEDIGGIFNPDNLHKALLSGLLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLSKRP
PQFLMAAELVETSRLWARNVAEIDPAWVEHIGKNLLKHHYSEPYWSTKRVAAMVHQRSTL
YGVPVIADRSVGYASIDLHAARDMFIREALVNGNWTTHHAFYRRNAEKLLSAAQIEEKIR
RRDVVVDEDTLFSFYDSRIPKHIATGRSFDRWWKTTAHETPHLLDFDLEELRRDGAANVD
EKDFPDVWRRGSLEFGLTYHFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVT
DLIRSLPKHLRKTVVPAPDFAHKITAMLAYRDGSLYHRIAECLAELGRPGISAEDFNPQA
LPKHLKITFAAVDKRGRIIDRDKSLESLKSRRSEQIRASVSRVSHAVEQSSAKEWTTQSL
GAIAQEVTTKVDGQIVTTYPALVVTPEGVSVKAMATKREADASMFTATLTLLLKAVPVNT
QKMLNGLPLQQRVAIENYPHGGATGFVNDARVTVVRDLIIAHGGAVRSPEEFSKLQAVIK
PLVPSKVRAIVVELAPGINSYLRIKSEISNWAGPAIDDINNQLNFLLPPHALSQHGAQRL
KHLSRYVQAITLRLEDMGRMPDRDADRQLLINRLERDLAQKVQKSGHGKSTRQIRDIQWM
IQELRVSLFAQRLGTAQSVSERKIAKAIEQL
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtactcaacagttgaggttcttttacccaacagagccaagtaccatggtcaagaaatg
agtactgcgaaacatcagccccgcgataataacaacgttgataccaacgcaatccctgcc
actcctaagaagcaacgacactcgacggcatctttccgaccggatgccgagttacgttct
gcaaagaaatcgcttcgcacaaagcttaatcaggtcagtattgccgaggaacgagtcttt
cttcgtcgtattcacaaggcctcgtccatgggtgccattaaggctatcaccaatgatatt
gatcaagcccaggcaacattattacaacgaacagcaaacattcctgctgttacgttcccc
gagaatcttccagtctctagccaacgtgacgctatcgcagaagctatcaccaacaatcag
gttgtcattattgcgggagaaacaggatcgggaaaaaccacgcaaattcctaagatctgt
ttagagctaggccgcggagtacgtggtttgatcggccatacacaaccgcggcggcttgct
gcacgcacggttgcagaacgcatcgcggaagaactcggtcaaaaaatcggtgattcggtg
ggatatgccatccgttttgatgatcgcgtttctgcgtccacgtctatcaagttgatgacc
gacggcattctgctcgcagagatgcagcgagatcgcttcctcaacgcttacgacacaata
atcatcgatgaagcgcacgagcgcagtctcaatatcgattttattctcggctacctcaag
cagctccttccacggcgtcctgatcttaaagtcatcattacctctgcgacaatcgatcca
gaacgatttgcacagcacttctctgacgcccacggtaatcctgcgccaatcattgaagtc
tccgggcgcacataccccgttgagattctttatcgtccgcttgaactctccgagggcgaa
aaacttatagacgtcgatcccatcgatggactcatccaagccatccaggagcttatggga
tatggccccggagatatcctgtgcttctttgcaggagaagcagatattcgcgaggccatg
gatgctatcgaagccaaacgctggaaaaacgttgaggtcactcccctcttcggccgcctc
tccaaccaagagcagcatcgggttttctctccccattcaggacgcagaattgttttagca
accaatatcgcggaaacctcacttactgttcccggtattcattttgtggtggacaccgga
accgcacgcatttccaggtattccactcggactaaagtccagcgccttcctatcgaacca
atttcgcaggctagcgccaatcaaaggtcaggacgctgtggtcgtgtcacggatggcata
gcgatccgcttgtactcccaacaagattttgagtctcgaccagaatttactgacccagaa
atcctgcgaacaaatttggccagtgttatccttcggatggcttcgctcaaattaggcgat
attgaaaactttccttttattcaagcccctgacacccgggccatccgcgacggtttcttg
cttctcaaagagctcggagctctcaccgagtcggatcaagaagattctcttcgtctcacc
acagtcggccgtagcttagccaagattcccctggatcctcgtcttgcgcgaatgctgatt
gctgcagaagaatacggttgtctcagagaggcctacatagtggtagccgctttgagcatt
caagatatccgtgaacgtccattggaaaagcaaagccaggcggaccaactccacgcacgt
tttaaagacacaagcagcgattttcttagctatcttaagctctgggaatacatcgcagaa
aagcgtgcagaactgtctggcaatgctttccgacgcaccatgcaatctgaatttttgcac
tatatgcgcatcagggagtggtcagatctcattcgtcagttgcgtagcatcggggaacag
attggctggaccaacccagaagacatcggagggattttcaatcctgacaatttacacaaa
gctctgctctctgggttgttatcccatatcggtttgcgcgatggtgattccaaagagttc
ataggcagcagaaactccagattcttagtattcccaggttcttctttatccaagcgtcca
ccgcaattcctgatggcagcggaactggtagaaacttcccgattgtgggcacgaaatgta
gcggaaatcgatcccgcttgggtcgaacatataggtaaaaacctgctcaaacaccattac
tctgagccgtattggtccacaaaacgcgtggccgccatggtgcaccaaaggtcgacgtta
tatggtgtgccagttattgctgatagatcagtcgggtatgcctctattgatcttcacgct
gcccgcgatatgttcattcgggaagcgctagtcaacggcaattggactacgcaccatgct
ttttatcgtcgtaacgcagaaaaactactttcagctgcacaaattgaagaaaaaatccga
cgccgtgatgttgtagtcgatgaagataccctctttagcttttacgattccagaatcccc
aagcacatcgccaccggacgttcctttgaccgctggtggaaaactactgcgcacgaaacg
ccacaccttctggactttgatctggaggaactgcgccgagatggcgcagcaaacgtcgat
gagaaagatttccccgatgtatggcgccgagggtctttggaattcggtttaacttatcac
tttgatcccagtgccgaagacgacggtgtcactgttcttgtccccgtgcccttgctggga
ggcctcgatgccgatggctttgaatggcttgttccagggttgttggaagatctggtcacc
gacctgatccgttctttacctaaacacttgcgtaaaaccgttgttcctgcacccgatttt
gcccataaaatcacagcgatgctggcctatcgtgacggttccctttaccatcgcatcgcc
gaatgcttagcagagttgggtcgtcctggaatatctgcggaagacttcaacccacaagcg
cttcccaaacacctcaaaataacattcgcggctgtggataaacgcgggcgtatcatcgat
cgggataaatcgctcgagtcgctcaaatcccgacgttccgaacagatccgagcatcggtt
tcgcgggtgtctcatgcagttgagcagtcctctgctaaggaatggactacgcagtctcta
ggtgctatcgcacaagaagtcaccacaaaagtcgatggacaaatagtgacaacgtaccca
gcacttgtcgttacgcccgaaggcgtttctgttaaggctatggcgactaaacgcgaggct
gatgcctccatgtttacagcgacgctaacgttattactcaaagccgtacccgtgaacacc
caaaagatgctcaatggactgccgctgcaacaacgagttgctatagaaaattatccgcac
ggtggcgccacaggctttgtcaacgatgcgcgggttacggtcgtacgagacttgatcatc
gctcacggtggcgcggtgaggtcaccagaagagttttccaagctacaagcggttatcaaa
ccattagttcccagcaaggtacgtgcaatagtcgtcgaattagctcccggtattaactct
tatcttcgcatcaaatcagagatcagcaattgggcgggtccagctatcgacgatattaac
aatcaactcaattttctacttccgccgcatgccctatcccagcatggagcacaacgcctc
aagcacctttcaagatacgtgcaagcaatcacgcttcggctcgaagacatgggtcggatg
cctgatcgagatgcagacagacagttactgattaatcgattagaacgggacctagcgcag
aaagttcaaaaatctgggcacggaaaatctactcgacagatacgagacatccaatggatg
attcaagaattgcgtgtcagcctttttgcccaaaggctgggaactgcacaatcagtctct
gaaaggaagattgcaaaagcaatcgagcagctctaa
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