Curtobacterium sp. MR_MD2014: NI26_12695
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Entry
NI26_12695 CDS
T04180
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cum
Curtobacterium sp. MR_MD2014
Brite
KEGG Orthology (KO) [BR:
cum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cum03019
]
NI26_12695
Enzymes [BR:
cum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NI26_12695
Messenger RNA biogenesis [BR:
cum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NI26_12695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
T2SSE
nSTAND_NTPase5
nSTAND3
SLFN-g3_helicase
AAA_30
ResIII
NACHT
PhoH
FtsK_SpoIIIE
UvrD-helicase
Zeta_toxin
HI_1622_C
Motif
Other DBs
NCBI-ProteinID:
AIV41634
LinkDB
All DBs
Position
2747510..2751379
Genome browser
AA seq
1289 aa
AA seq
DB search
MSATPVITYPPELPVSQRRDDIAAAIRDHQVVIVAGATGSGKTTQLPKICLELGRESIGH
TQPRRIAARTIAERVSEELGSELGDLVGYQVRFTDKVSGNTRIKLMTDGILLNEIHFDRD
LERYDTIIIDEAHERSLTIDFLLGYLKRLLPRRPDLKVIITSATIDPESFSQHFGGAPII
EVSGRTYPVEVRYRPLVADDAADGDTGADEGDDTDPRTDDSGGRGGSADDRDVLQGITDA
LDELAREDPGDVLVFLSGENEIRDAQEAIEGKRYPGTEVLPLYGRLSAADQHRVFERRTT
PGVRRRVVLATNVAETSLTVPGIKYVIDTGTARISRYSPRAKVQRLPIEAISQASANQRS
GRAGRTSAGIAVRLYSEDDFTRRPEFTDPEILRTNLAAVILQMISLGFGDIERFPFLQPP
DSRGVKDGLDLLRELRAVDRDGRITRSGRQLTRLPIDPRLGRMVLEAGRQGVGREVIAIV
SALSIQDPRERPLEKRAHADQLHARFADPTSDFLTLLNLWNHIEDKQEELSSSAFRRLCK
AEFLNYLRIREWQDLYRQLSRAAKQVDVRVGQSRSEDGDAVHRSLLAGLLSQIGLRDKEK
RDYLGARNVRFVVFPGSVLAKKQPDAVMAAELVETSRLFARTVGRIDPAWVEPLAGDLLK
RTYGEPHWEKKQGAVVAYERVTLFGVPIVQRRRVQYGRVDPEHSRELFIRHALVEGEWDA
QQAFDRANRKLRRELEQLEERTRRRDILFDDERVYEFYDARIPADVATTRDFEGWWRTTR
REQPDLLTMRRQDLLDEDAAEAAQDEQEYPTQWRSGDQRLAIKYRFEPGAQDDGVSVQVP
LALLPRMREEGFDWQVRGLRKELVTALIKSLPKQIRKNVVPAADWAEKIVAELPDDAPTE
PTESFRATLAAAIQRMTYVPVTEADFDLSRVPAHLLPTWAVVDERGRRVESGKDLAALQT
KLKDRTQQSVASATARAAARPGGAARVAGASSGTQVERSGLTAWPSDDLPQVLDTKQAGG
VIRAYPSLVEEGDGPKATVGVRLLATPGDRAVRMPAGVRRLVMHAVPSPVSYVQSHLTAQ
EKLALAASPYASTAALFDDVLAAVVDAGIRRTHPDGLVFTKADFEAVRDAVSATVVDTMF
TAVSEVAAVLTAQRAADKAMKQANSMALLPALTDMRQQVERLVFPGFVAVAGLDRLRRIR
VYLRGVEARVQKLLQNPGRDATWMREVTVATDRYTDAGGVFPPSVGAHPELVHARWMLEE
FRLSLFAQELGTAETVSLQRITKTLAAAR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacgcccgtcatcacgtacccgcccgaactgccggtgtcgcagcggcgggac
gacatcgccgccgcgatccgtgaccaccaggtcgtcatcgtcgccggcgccacgggctcg
ggcaagacgacgcagctgccgaagatctgcctggagctcggccgcgagtcgatcgggcac
acccagccccgccggatcgccgcccgcaccatcgccgagcgcgtgtccgaggaactcggc
agcgagctgggcgacctggtcggctaccaggtgcggttcaccgataaggtgagcgggaac
acccggatcaagctcatgaccgacgggatcctcctcaacgagatccacttcgaccgtgac
ctggagcgctacgacacgatcatcatcgacgaggcccacgagcgctcgctgacgatcgac
ttcctgctcgggtacctgaagcggctgctcccccggcgccccgacctcaaggtcatcatc
acgagtgcgacgatcgacccagaatcgttctcgcagcacttcggcggcgctccgatcatc
gaggtgtccggccggacgtacccggtcgaggtccgctaccggccgctcgtcgccgacgac
gcggcggacggtgacaccggtgcggacgagggcgacgacaccgacccgcggaccgacgac
agcggtggccgcggtgggagcgcggacgaccgcgacgtgctccagggcatcaccgacgcg
ctcgacgaactcgcgcgcgaggacccgggcgacgtcctcgtgttcctgtcgggcgagaac
gagatccgcgacgcgcaggaggcgatcgagggcaagcgctacccgggcaccgaggtcctg
ccgctctacggccgactctccgccgccgaccagcaccgcgtgttcgagcgccggaccacc
ccgggtgtccgtcgccgcgtcgtcctcgccacgaacgtggcggagacctccctgacggtg
ccgggcatcaagtacgtgatcgacaccggcaccgcccgcatctcccggtactccccgcgg
gcgaaggtgcagcggctgccgatcgaggcgatcagccaggcgagcgcgaaccagcgctcc
ggacgcgcgggtcgcaccagcgcggggatcgcggtccggctctactccgaggacgacttc
acgcgccgtccggagttcaccgaccccgagatcctccgcacgaacctcgcggcggtcatc
ctgcagatgatctccctcggcttcggcgacatcgaacgcttcccgttcctgcagccgccg
gactcccggggcgtcaaggacggcctcgacctgctgcgggagctccgcgcggtcgaccgc
gacggccggatcaccaggtcgggccgacagctcacccggttgccgatcgacccgcggctc
ggccggatggtgctcgaggccggccgccagggcgtcgggcgcgaggtcatcgcgatcgtc
agcgccctgagcatccaggacccacgtgaacgaccgctcgagaagcgtgcccacgccgac
cagctgcacgcccggttcgccgatccgacgagcgacttcctcaccctgctcaacctctgg
aaccacatcgaggacaagcaggaggagctgtcgtcgagcgcgttccgccgcctgtgcaag
gccgagttcctcaactacttgcggatccgcgagtggcaggacctgtaccggcagctgtcc
cgcgccgcgaagcaggtcgacgtgcgggtgggccagtcgcgctccgaggacggcgacgcg
gtgcaccgttcgctgctcgccgggctcctcagccagatcgggctgcgggacaaggagaag
cgcgactacctcggcgcgcgcaacgtccggttcgtggtgttcccgggcagcgtcctggcg
aagaagcagcccgacgccgtgatggccgccgagctcgtcgagacgagtcggctgttcgcc
cggaccgtcggccggatcgaccccgcgtgggtcgagccgctcgccggtgacctgctcaag
cgcacctacggcgagccgcactgggagaagaagcagggtgcggtcgtcgcgtacgagcgc
gtgacgctgttcggtgtcccgatcgtgcagcgtcgccgcgtgcagtacgggcgcgtcgac
cctgagcactcgcgcgagctgttcatccgccacgccctggtcgagggcgagtgggacgcg
cagcaggccttcgaccgcgcgaaccggaagctccgtcgcgagctcgagcagctcgaggag
cgcacccgccgtcgcgacatcctgttcgacgacgagcgtgtgtacgagttctacgacgca
cggatccctgcggacgtcgccaccacccgcgacttcgaggggtggtggcggacgacccgt
cgcgagcagccggacctgctcacgatgcggcggcaggacctgctcgacgaggacgccgcc
gaggccgcccaggacgagcaggagtacccgacgcagtggcgttccggtgaccagcgcctg
gcgatcaagtaccgcttcgagccgggcgcgcaggacgacggcgtcagcgtgcaggtgccg
ctcgcgctgctcccccgcatgcgcgaggagggcttcgactggcaggtccgtggcctgcgg
aaggaactcgtcaccgcactcatcaagtcgctgccgaagcagatccggaagaacgtcgtc
cccgctgccgactgggccgagaagatcgtcgccgaactgcccgacgacgctccgaccgag
ccgacggagtccttccgcgcgaccctcgccgcggcgatccaacggatgacgtacgtgccg
gtgaccgaggccgacttcgacctgtcccgggtgccggcgcacctgctgcccacctgggcg
gtcgtcgacgagcgcggccgtcgggtcgagtccggcaaggacctcgcggccctccagacg
aagctgaaggaccggacgcagcagagcgtcgcctccgcgacggcgagggcagcggcccgg
ccgggaggcgcggcgcgcgtcgccggggcctcctccggcacgcaggtggaacgctccggc
ctcaccgcctggccgtccgacgacctgccgcaggtcctcgacacgaagcaggccggtggc
gtgatccgtgcctacccgtcgctggtcgaggagggcgacggtccgaaggcgacggtcggt
gtccgcctcctggcgacgcccggtgaccgcgctgtgcgcatgcccgccggcgtccgtcgg
ctcgtcatgcacgccgtgccctcgccggtgtcgtacgtgcagtcgcacctcacggcgcag
gagaagctcgcgctggccgcgagcccgtacgcgtcgaccgcggcgctgttcgacgacgtg
ctggccgccgtcgtggacgcgggcatccgacgcacccaccccgacggcctggtcttcacg
aaggccgacttcgaggcggtccgcgatgccgtgtccgccaccgtcgtcgacacgatgttc
accgccgtgtccgaggtcgccgccgtgctcaccgcgcagcgggcggccgacaaggcgatg
aagcaggcgaactcgatggcgctcctgccggcgctcaccgacatgcgccagcaggtggag
cgcctggtcttcccgggcttcgtcgccgtcgccgggctcgaccggctccggcggatccgg
gtgtacctgcggggtgtcgaggcccgcgtgcagaagctcctgcagaaccccggacgtgac
gccacgtggatgcgtgaggtcacggtcgccaccgaccgctacaccgacgccggtggcgtg
ttcccgccgtcggtcggtgcgcatcccgagctcgtgcacgcacggtggatgctcgaggag
ttccgcctgagcctgttcgcccaggagctcggcaccgccgagacggtctcgctgcagcgg
atcacgaagaccctggccgccgcccgctga
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