Cupriavidus malaysiensis: BKK80_07985
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Entry
BKK80_07985 CDS
T04978
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cup
Cupriavidus malaysiensis
Pathway
cup03410
Base excision repair
cup03430
Mismatch repair
cup03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BKK80_07985
03430 Mismatch repair
BKK80_07985
03440 Homologous recombination
BKK80_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cup03400
]
BKK80_07985
DNA repair and recombination proteins [BR:
cup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BKK80_07985
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BKK80_07985
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKK80_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AOZ05754
LinkDB
All DBs
Position
1:complement(1829817..1831514)
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AA seq
565 aa
AA seq
DB search
MTRIATRSFSTEHAASLAAAGLHPTLARILSARGVSRPDELATELPGLVAPGEMKGIGHA
ATYLADAIAAGRRLLIVADYDCDGATACAVGVRGLRMLGARVDYIVPNRFEYGYGLTPEI
VELAARQQPDVIVTVDNGIASVDGVAAANARGIDVVVTDHHLPGATLPEAAVIVNPNQPG
CPFPSKNLAGVGVMFYVLLALRAELRTRGVFDARTQPRLDTLLDLVALGTVADVVKLDSN
NRILVAQGLKRMRAGRMHAGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADMSLG
IECLLTDDAGRAWEIAQELDGMNRERRDIEAGMQQEALQILEQPMAGLDPASRYTVSVFN
ETWHQGVIGIVASRLKEKFHRPTITFAPGDDATIKGSGRSIPGFHLRDALDLVSKRHPGL
LVKFGGHAMAAGLTLRADTFGQFMEAFEAVGREWLDEKQLARVIETDGDIDDGCFSPEFV
NLLDQQVWGQGFPAPTFCGEFDVVRQTVLKGKHLKLLLGRGAHRFDAIWFNHAEALGASA
LVAYRLDNNTFNGVTRVQMVIEHAQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatcgccacccgctccttctcgaccgagcacgctgcgtcgcttgccgccgcc
ggcctgcaccccaccctggcccgcatcctgtcggcgcgcggcgtcagccggcccgacgaa
ctggccaccgagctgcccgggctggtggcgccgggcgagatgaagggcatcgggcatgcc
gccacctacctggccgatgccatcgccgccggccgccgcctgctgatcgtggccgactac
gactgcgacggcgccaccgcctgcgcggtaggcgtgcgcggcttgcgcatgctgggcgcc
cgcgtcgactacatcgtgcccaaccgcttcgagtacggctacgggctgacgccggaaatc
gtcgagctggcggcacgccagcagccggacgtgatcgtcacggtggacaacggcatcgcc
agcgtcgacggcgtggcggcggccaatgcccgcggtatcgacgtggtggtgaccgaccac
cacctgcccggcgccacgctgccggaggcggccgtgatcgtcaatcccaaccagcccggc
tgcccgttccccagcaagaacctggcgggcgtgggcgtgatgttctatgtgctgctggcg
ctgcgcgccgagctgcgtacgcgcggtgtattcgatgcccgcacccagccgcgcctcgac
accctgctcgacctggtggcgctcggcaccgtggccgacgtggtcaagctcgacagcaac
aaccgcatcctggtggcgcagggcctcaagcgcatgcgcgccggccgcatgcacgccggc
gtggccgccctgttccgcgccgccggacgggaagcggcacgcgccaacaccttcgacctc
ggcttcggcctgggcccgcgcctgaacgccgccgggcggctcgccgacatgtcgctcggc
atcgaatgcctgctgaccgacgacgccggccgcgcctgggagatcgcccaggaactggac
ggcatgaaccgcgagcggcgcgacatcgaggccggcatgcagcaggaggcgctgcagatc
ctggagcagccgatggcgggcctggacccggcctcgcgctacacggtcagcgtcttcaac
gagacctggcaccagggcgtgatcggcatcgtggcctcgcgcctgaaggagaagttccat
cgcccgaccatcacgttcgcccccggcgacgatgccaccatcaagggctccggccgctcc
atccccggcttccacctgcgcgacgcgctcgacctcgtctccaagcgccacccggggttg
ctggtgaagttcggcggccatgcgatggcggccggcctgaccttgcgcgccgacaccttc
ggccagttcatggaagccttcgaggcggtaggccgggagtggctggacgagaagcagctg
gcgcgcgtgatcgagaccgacggcgacatcgacgacggctgcttctcgccggagttcgtc
aacctgctcgaccagcaggtatggggccagggcttccccgccccgaccttctgcggcgag
ttcgacgtggtgcgccagaccgtgctcaagggcaagcacctgaagctgctgctggggcgc
ggcgcgcaccgcttcgatgcgatctggttcaaccacgccgaggcgctcggcgccagcgcg
ctggtggcctaccggctggacaacaacaccttcaacggcgtcacgcgggtgcagatggtg
atcgagcacgcgcaataa
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