Cupriavidus malaysiensis: BKK80_19775
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Entry
BKK80_19775 CDS
T04978
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cup
Cupriavidus malaysiensis
Pathway
cup03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cup00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BKK80_19775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cup03021
]
BKK80_19775
03400 DNA repair and recombination proteins [BR:
cup03400
]
BKK80_19775
Enzymes [BR:
cup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BKK80_19775
Transcription machinery [BR:
cup03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BKK80_19775
DNA repair and recombination proteins [BR:
cup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BKK80_19775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AOZ07826
LinkDB
All DBs
Position
1:complement(4349535..4353782)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVIEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIM
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEFELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDRNGNTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVTVSDVVNPETQETAIEAGTLLDEDLVELIDNIGVDEVKVRTPLSCDTRYGL
CAKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDANNQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQISDVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
AERERAQAIAEEEQSLFIEPPVVQATTTEGEGDAA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgctcgtggtcgtacggtgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcattcgtggtgatcgaacccggcatgaccccgctcaagaagagccagatcatg
tccgaggacgattacctggccaagtgcgacgagtacggcgagggtgagttcgtcgccatg
atgggtgccgagggcatccgcgaactgctgcgcggcatcgatatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggctccgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctggaggccttccagcgctcgggtatcaagcccgagtggatgatcatg
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgcccctggatggcggtcgt
ttcgccacctcggacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctgctggaactgaaggcgcccgagatcatcgtgcgcaatgagaagcgcatgctg
caggaagcggtggattcgctgctggataacggccgtcgcggcaaggcgatgaccggcgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgcttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
accctgaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccc
ttcatcttccacaagctggagacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaaccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgctgttcccggccaacggcgacccgtcg
atcgtgccgtcgcaggacgtggtgctgggcctgtactacaccacccgcgacaagatcaac
ggccgcggtgagggcatgaccttcgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgagctggcttcccgcgtgaacgtgcgtatcaccgagttcgagctggtggac
aaggacgccgagggcgacgcccgcttcgcgcccaagatcacgctgcaggccaccacggtc
ggccgcgccatcctgtcggagatcctgcccaagggcctgcccttctcggtgctgaacaag
ccgctgaagaagaaggagatctcgcgcctgatcaacaccgccttccgcaagtgcggcctg
cgtgagaccgtgatcttcgctgacaagctgctgcagtcgggcttccgcctggccacgcgc
gccggcatctcgatcgcgatcgacgacatgctggtgccgcccgcgaaggaaaagatcatc
gccgaagcctcggccaaggtgaaggaatacgacaagcagtacatgtcgggcctggtgacc
gaccaggagcgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaggacgtggtcgaccgcaacggcaataccgtc
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcgcggggttccgcg
gcgcagatccgccagctggccggcatgcgcggcctgatggcaaagccggacggctcgatc
atcgagacgccgatcacggcgaacttccgcgaaggcctgaacgttctgcagtacttcatc
tcgacccacggtgcgcgtaagggtctggccgatacggcactgaagaccgcgaactccggt
tacctgacccgccgtctggtcgacgtgacgcaggatctggtggtggtggaagacgattgc
ggcaccagcaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgtgaccgtatcctcggccgcgtgaccgtctccgacgtggtgaacccggaaacccag
gaaaccgcgatcgaggccggcaccctgctggacgaagatctggtcgagctgatcgacaat
atcggcgtggacgaggtcaaggtgcgtacaccgctgtcctgcgacacgcgctacggcctg
tgcgccaagtgctacggccgcgacctcggccgcggcgtgctggtgaactcgggcgaagcg
gtgggcgtgatcgccgcgcagtcgatcggcgagccgggcacgcagctgaccatgcgtacc
ttccacatcggtggcgcggcatcgcgtgcggcagtcgcgtcgagcgtggaagccaaggcg
accggtaccgtgcgcttcacggcgaccatgcgctacgtcaccaacgccaagggcgagctg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccatggccgcgagcgtgag
cgccacaagatcccgtacggtgccacgctgctggtgcaggatggccaggcgatcaaggcc
ggcacgcagctggctacctgggatgcgctgacgcgtccgatcgtttcggagtactcgggc
accatcaagttcgagaacgtcgaagagggcgtgaccgtcgccaagcagatggacgaagtg
acgggcctgtcgaccctcgtggtgatcgacgccaagcgccgcacggccgccaccaagggc
atccgcccgcaggtgaagctgctcgacgccaacaaccaggaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcacgtgggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtgatcacggacctggacggcaacgcccacgagttcctgatcgccaaggaaaag
caggtcctggtgcacgatggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaggaactggcgcactacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgccagatgctgcgccgcgtgcagatctcggatgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgctcggagctgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacctacgagaacctgctgctcggtatcaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacccgcgtgctgaccgaa
gccgcgatcatgggcaagacggacgacctgcgcggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgtgcccgcaaggcgcgcgaggcg
gccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
ccggtggtgcaggcgaccaccaccgaaggcgagggcgacgcggcctga
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integrated database retrieval system
