Cupriavidus sp. Agwp_2: LPA45_02515
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Entry
LPA45_02515 CDS
T11307
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupa Cupriavidus sp. Agwp_2
Pathway
cupa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPA45_02515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupa03019
]
LPA45_02515
Enzymes [BR:
cupa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPA45_02515
Messenger RNA biogenesis [BR:
cupa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPA45_02515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Ty4_N
Sacchrp_dh_NADP
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
XDA00487
LinkDB
All DBs
Position
536602..538209
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AA seq
535 aa
AA seq
DB search
MSFSELGLSEKIVRAVAEQGYTSPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLSASAAARAAGNAPRPGKPAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGV
GINPQIEQLKRGVDIVVATPGRLLDHVSQRTVDLSQVELLVLDEADRMLDMGFIHDIRKI
LNVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYAVDRERKR
ELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKA
GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE
HALLRDIERLIKRKIEQTVLTGFEVDPTIAAEPIQKGRQQRGGGQGQGQGQAQGRGRSQA
RPANADGEPAPRARAPRQPQDAPRQGQGGQPRQRQAEGGQRRGGGNGNAGSNHNGSSNGG
ARNGAPRQGSQEPARGQQRAAAQPARQPHDAAPAPARNRRPAPQAALLGGNRNRD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctccgaactcggcttgtccgaaaagattgtgcgtgcggtggccgaacagggc
tacacctcaccgactcccatccaggcccaggcgatccccgccatcctcaagggtggcgac
ctgctcgcaggcgcccagaccggcaccggcaagaccgccggcttcaccctgccaatgctg
cagttgctgtccgcgtccgccgcggcccgcgcggccggcaacgcgccgcgtcccggcaag
ccggccgtgcgcgcgctggtgctgacgcccacgcgcgaactggctgcgcaggtcgaggaa
agcgtgcgcaactacggcaagtacctgcgcctgcgctccatggtgatgttcggcggcgtc
ggcatcaacccgcagatcgagcagctcaagcgcggcgtcgatatcgtggtggccacgcca
ggccgcctgctcgaccatgtgtcccagcgcaccgtcgacctgtcgcaggtagagctgctg
gtgctcgatgaagccgaccgcatgctcgacatgggcttcatccacgacatccgcaagatc
ctcaacgtgctgccggccaagcgccagaacctgctgttctcggcgacgttctcggacgat
atccgcgcactggccgaccgcctgctgaacaaccccgcctcgatcgaggtggcgcggcgc
aacaccaccgccgagaccgtcgaccagcgcgtctatgcggtcgaccgcgaacgcaagcgc
gagctgctggcccacctggtgcgccagcatgactggcaccaggtgctggtgttcacccgc
accaagcatggcgccaaccgcctggccgagcagttgaccaaggacggcctgtcggcgctg
gcgatccacggcaacaagagccagtcggcgcgcacgcgcgcgctgtccgaattcaaggcc
ggcacgctgcggctgctggtggcgaccgatatcgccgcacgcggcatcgacatcgaccag
ctcccgcatgtggtcaactttgacctgccgaacgtgcccgaggactacgtgcaccgcatc
gggcgcaccggtcgcgccggcgccgagggcgaggcgatctcgctggtctgcgtggacgag
cacgcgctgctgcgcgatatcgaacgcctgatcaagcgcaagatcgagcagaccgtgctg
acggggttcgaggtcgacccgaccatcgcagcggaaccgatccagaagggccgccagcaa
cgcggcggcggccagggacaaggacagggccaggcccagggccgcggccgtagccaggca
cgcccggcaaacgccgacggtgagccggcaccgcgcgcacgcgcgccgcgccaaccccag
gacgcaccgcgccagggccagggcggccagccgcgtcaacgccaggccgaaggcggccag
cgccgcggcggtggcaacggcaacgcaggcagcaaccataatggcagtagcaatggcggc
gcccgcaacggcgcaccgcgccagggcagccaggagccggcacgcggccagcaacgcgcc
gccgcccagccggcacgccagccgcacgatgctgccccggcgcccgcccgcaaccgccgc
ccggcgccgcaggccgcgctgctcggcggcaaccgcaaccgcgactga
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