Cupriavidus sp. Agwp_2: LPA45_10770
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Entry
LPA45_10770 CDS
T11307
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cupa Cupriavidus sp. Agwp_2
Pathway
cupa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPA45_10770 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupa03019
]
LPA45_10770 (rnr)
03016 Transfer RNA biogenesis [BR:
cupa03016
]
LPA45_10770 (rnr)
Enzymes [BR:
cupa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPA45_10770 (rnr)
Messenger RNA biogenesis [BR:
cupa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPA45_10770 (rnr)
Transfer RNA biogenesis [BR:
cupa03016
]
Prokaryotic type
tRNA degradation factors
LPA45_10770 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
CSD
WHD_RNase_R
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
XCZ98729
LinkDB
All DBs
Position
complement(2294350..2296947)
Genome browser
AA seq
865 aa
AA seq
DB search
MNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALSVTRKEHDGFQKRLAAMERDGQIELN
RKGRYELANQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGY
DRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQGKARVGQV
VSVELIEYPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFSPAAAHEASALPDE
VRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVSHYVRP
GTPLDGDALDRATSVYFPRRVIPMLPEKLSNGLCSLNPNVDRLCMVCDAVLTAKGELKGY
QFYPAVMHSTARLTYNEVWAVLSNTKGPEAHKRAELVPHLQNLYELFQVLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALYRIHA
GPSEEKLKNLREFLKTSGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELNTAISP
KARRLQAKDAEQKAELTAARAKRNEAIWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGSDFAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYR
LTDRVRVQVSRVDLDARKIDFRLVQEPSARTLRARATGTDTQPRVPAAHAVPARKKGRQL
AALLGGSSKPEESFDETLDRVIEEQPVFEAVITPLKPHVKTGGKPAKRAAKPKPAHLEKP
RKPASKSHPAKTAGKSAAKRTPRKR
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatccccagccgggaagaaatcctgggcgtgctgagaacg
tcgggatctccgcagtcggcaggcgatatcgccaaggccctgtcggtcacgcgcaaggag
catgacggcttccagaagcgcctggcggcgatggaacgcgacggccagatcgaactgaac
cgcaagggccgctatgaactggccaaccagcccaactttgtcactggccgcgtgcagggc
caccgcgacggtttcggcttcctgatccgcgacgatggcgaagacgatatcttcctgccc
gagcgcgagctgcagaaggccatgcacaacgaccgcgcgcaagtgcgcgtggtgggctac
gaccgccgtggccggcccgaagggcaaatcgtcgagatcatcgagcgcgccaaccgcttc
gtgatcgggcggctgctcagtgaaggcggcgtgctggtggtcgcgcccgaggacaagcgc
atcagccaggacatcctgattccgcccaaggcgcagggcaaggcgcgcgtggggcaggtg
gtcagtgtcgagctgatcgagtatcccgaccgctatgtgcagccggtgggccgcgtggtg
gaagtgctcggtgatatcgacgatccgggcatggaaatcgagatcgcggtgcgcaagtac
ggcgtgccgcatgccttctcgcccgcggcggcgcacgaagcctccgcgctgcccgacgag
gtgcgccaggccgacctggaccaccgcatcgacctgcgcgacatcccgctggttaccatc
gacggcgaagatgcgcgcgatttcgacgatgcggtctactgcgagccggtcaagatcggc
cgtgccaagggctggcgcctgatcgtcgcgatcgccgacgtgtcgcactacgtgcgcccc
ggcacgccgctggacggcgatgcgctggaccgtgccacgtccgtgtacttcccgcgccgc
gtgatcccgatgctgccggagaagctgtccaacgggctgtgctcgctcaatcccaacgtg
gaccggctgtgcatggtctgcgatgctgtgcttacggccaagggcgagctcaagggctac
cagttctatcctgcggtgatgcactcgaccgcgcgcctgacctacaacgaggtctgggcg
gtgctgtccaacaccaagggtcccgaggcgcacaagcgcgccgaactggtgccgcacctg
cagaacctgtacgagctgttccaggtcctgctcaaggcgcggcgcgagcgcggcgcgatc
gacttcgacaccaccgagacctatatcgtctgcaacgcgcagggcaagatcgagcagatc
ctgccgcgcacccgcaacgatgcgcaccggctgatcgaggaatgcatgctgaccgccaac
gtgtgcgcggcggacttcctcgagcgcttcaagcacccggcgctgtaccgcatccacgcc
ggcccgagcgaagagaagctgaaaaacctgcgcgagttcctgaagacctcgggtctgtcg
ctgggcggcggcgacaagccgcaggcgtccgactatgcggaggtgatggacaagatcaag
tcccgccccgatgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggcggtg
tacagccccgacaatattggccacttcggcctggcgtacgaagcctacgcgcacttcacc
agcccgatccgccgctatcccgacctgctggtgcaccgcgcgatcaaggcggtgctggcg
cataccaagtaccagcccgcgttcgcccacggcaccgagctgaacaccgcgatctcgccc
aaggcacgccgcctgcaggccaaggacgccgagcagaaggcggagctgaccgccgcgcgc
gcgaagcgcaacgaggccatctgggacgagcttggcctgcattgctcggccaacgagcgc
cgtgccgacgaggcttcgcgcgatgtcgaggcctggctcaagtgctacttcatgcgcgac
aagctgggcagcgattttgccggcaccgtcagcgccgtgacgtcgtttggtatcttcgtc
cagctcgacgaactgtacgtcgaagggctggtccacgtgaccgaactgggcagcgattac
ttccagtacgacgaggcccgcaacgagctgcgcggcgagcgcaccggcatccgctatcgc
ctgaccgaccgcgtgcgcgtgcaggtgtcgcgtgtggacctggatgcacgcaagatcgac
ttccgcctggtgcaggagccgtcggcccggacgctgcgtgcgcgcgcgaccggcaccgac
acccagccgcgcgtcccggccgcccacgcggtgccggcgcgcaagaagggccgccagctg
gcggcgctgctgggcggatcgtccaagccggaagagtcgttcgacgagacgctcgaccgc
gtcatcgaagagcagccggtcttcgaagcggtgatcacgccgctcaagccgcacgtcaag
accggcggcaagccggccaagcgcgcggccaagcccaagccggcgcacctggagaagccg
cgcaagccggcttccaagtcgcaccccgccaaaacggccggcaagtcggccgccaagcgc
actccgcgcaagcgttaa
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