Cupriavidus sp. Agwp_2: LPA45_12520
Help
Entry
LPA45_12520 CDS
T11307
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupa Cupriavidus sp. Agwp_2
Pathway
cupa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPA45_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupa03019
]
LPA45_12520
Enzymes [BR:
cupa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPA45_12520
Messenger RNA biogenesis [BR:
cupa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPA45_12520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XCZ99049
LinkDB
All DBs
Position
complement(2663440..2664939)
Genome browser
AA seq
499 aa
AA seq
DB search
MTTTTAPEPTTAGQTAVQTFESFGLDARILRALSDQGYTTPTPIQAQAIPVVLLGKDVMG
AAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAQH
TDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRM
LDMGFLPDLQRIINLLPAQRQTLLFSATFSAEIKRLAASYLKQPVTIEVARSNSTNENVR
QMVYQVEDGHKQAAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINASAIHG
DKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCVINFDVPYSAEDYVHRIGRTG
RAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGFDPTGEKSRQDEAERRRQRGD
LRRARGNGEGEERPRRHEHSGSRQVFRPSDDPFFSRPYEPSASSSQVKPSEEIAAALSRG
RQAPKRPVAALLGGVPRKS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacgaccgcaccagaacccaccaccgcagggcagaccgcggtgcaaaccttc
gaaagctttggcctggacgcgcgcatcctgcgtgccttgtccgaccagggctataccacg
cccacgccgatccaggcgcaggccattcccgtcgtgctgctcggcaaggacgtgatgggc
gccgcgcaaaccggcaccggcaagaccgccggcttcgcgctgccgatcatccagcgcctg
ctgccgctggccaacgccagcgcctcgccggcacgccacccggtgcgcgcgctgatgctg
acgcccacgcgtgaactggccgaccaggtctacgacaacgttgcccgctacgcccagcac
accgacctgcgcagcacggtggtgttcggcggtgtcgacatgaacccgcagaccgacgcg
ttgcgccgcggtgtcgagatcctggtggccacgcccggccgcctgctcgaccacgtgcag
cagaagtcggtgaacctgtcgcaagtgcagatgctggtgctggacgaagccgaccgcatg
ctcgacatgggcttcctgccagacctgcagcgcatcatcaacctgctgccggcgcagcgc
cagacgctgttgttctcggcaacgttctcggcggaaatcaagcggctggccgccagctac
ctgaagcagccggtcacgatcgaggtggcgcgcagcaactcgaccaacgagaacgtgcgc
cagatggtgtaccaggtcgaagatggccacaagcaggcggcggtggtgcacctgctcaag
cagcgtgccgaccagggcctgtcccgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcgcctggcacggcacctggagcgcgagggcatcaatgcctccgcgatccacggc
gacaagacccagaccgagcgcatgcagacgctggacggcttcaagagcggcaccatcgac
gcgctggtcgccaccgacgtggcggcgcgcgggctcgatatccccgacatgccgtgcgtg
atcaacttcgacgtgccgtacagcgccgaggactacgtgcaccgtatcggccgtaccggc
cgcgcgggtgccagcggcgatgcactgtcgatctacgtgcctggcaatgacgagcgcctg
ctgtccgatatcgaaaagctgatcaagcgcagcatcccgcgcggcaagctggaaggcttt
gacccgaccggcgagaagtcgcgccaggacgaagccgagcgccgccgccagcgcggcgac
ctgcgccgcgcgcgcggcaacggcgaaggagaggagcgcccgcgccgccacgagcacagc
ggcagccgccaggtgttccgtccttccgacgatccgttcttctcgcgtccgtacgagccc
agcgccagcagctcgcaggtgaagccgtcggaggaaatcgccgccgcgctgagccgtggc
cgccaggctcccaagcgtccggtggcggcgctgctgggcggcgtgccgcgcaagtcctga
DBGET
integrated database retrieval system
