Cupriavidus sp. Agwp_2: LPA45_12545
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Entry
LPA45_12545 CDS
T11307
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cupa Cupriavidus sp. Agwp_2
Pathway
cupa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPA45_12545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cupa03021
]
LPA45_12545 (rpoD)
Transcription machinery [BR:
cupa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPA45_12545 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
XCZ99053
LinkDB
All DBs
Position
complement(2668503..2670776)
Genome browser
AA seq
757 aa
AA seq
DB search
MKGKSITVAKQQNTEVESKRAAAAGAKSGAAKADSTATATKARTATTASVASERPAAPAI
KPEPKKRGRKPKAEMQHDDSTTDDVTEEFYENDVRAATPAAAPKTEKQKAKDRKAKEKAL
LKEFASTQQGTEEELELRRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVAT
LNDIGIAVYEQAPDAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMR
EMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILAHAERVANDEIKIDEFVD
GLIDPNADEAPEAPSAPAAASDDEDIESDDDEEADEEEDDEGDAGAGASARQLEELKQNA
LEKFRVIAEQFDKMRRAFEKEGYKSKPYVKAQEAIQAELMSIRFTARNVERLCDTLRGQV
DEVRKLERSILNIVVDKCGMPRSEFVARFPGNETNLDWISTVVADGKAYSGIVERNVPAV
HELQQKLIDLQSRVVLPLKELKGVNRKMAEGERRAREAKREMTEANLRLVISIAKKYTNR
GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDS
HLGDFIEDTNTLAPAEAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVG
KQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaggcaagagtatcaccgtggcgaaacagcagaataccgaagtcgagagcaagcga
gcggcagcagccggcgccaagagcggagccgccaaggcggacagcaccgcgacggcaacc
aaggcacgcaccgcgaccactgcatccgttgcatccgagcgtcccgctgccccggcaatc
aagccggagccgaaaaagcgcggccgcaagcccaaggccgagatgcagcacgacgacagc
acaacagacgacgtgactgaagagttttacgagaacgacgtgcgcgccgcgacgcccgct
gccgcgccgaagaccgaaaagcagaaggccaaggaccgcaaggccaaggaaaaggcactg
ctcaaggagttcgcctcgacccagcaggggaccgaagaggagctcgagctgcgtcgccag
aagctcaaggcgctgatcaagctcggcaagtcgcgcggctacctgacctatgcggaaatc
aacgatcacctgccggacgacatggtcgattcggaaacgatcgacacgctggtcgccacg
ctgaacgacatcggcatcgctgtctacgaacaggcgccggatgccgagacgctgctgctc
aacgacaacgcgccctcggccaccagcgaggaagaagccgaggaagaggccgaggcggcc
ctgtccacggtggactccgagttcggccgcaccaccgacccggtgcgcatgtacatgcgt
gaaatgggcacggtcgagctgctgacccgcgaaggcgagatcgagattgccaagcgcatc
gaagccggcctgaaggacatggtgatggcgatctcggcgtgcccggtcaccatctccgag
atcctggcccatgccgagcgcgtggccaacgacgagatcaagatcgacgagttcgtcgat
ggcctgatcgatccgaacgccgacgaagcaccggaagcgccctcggccccggctgcagcg
tccgacgacgaggacatcgagtccgacgacgacgaggaagccgacgaggaagaagacgac
gaaggcgatgccggcgccggcgcttccgcgcgccagctggaagagctgaagcagaacgcg
ctggaaaaattccgcgtgatcgccgagcagttcgacaagatgcgccgtgccttcgagaag
gagggctacaagtccaagccttacgtcaaggcacaggaagccatccaggccgagctgatg
agcatccgcttcaccgcccgcaacgtcgagcgcctgtgcgacacgctgcgcggccaggtg
gatgaagtgcgcaagctcgagcgctcgatcctgaatatcgtggtcgacaagtgcggcatg
ccgcgctctgaattcgtcgcccgcttcccgggcaacgagaccaaccttgactggatcagc
accgtggtggccgacggcaaggcctacagcggcatcgtcgagcgcaacgtgccggccgtg
catgagctgcagcagaagctgatcgacctgcagtcgcgcgtggtgctgccgctgaaggaa
ctgaagggcgtcaaccgcaagatggccgaaggcgagcgtcgtgcccgcgaagccaagcgc
gagatgaccgaggccaacctgcgcctggtgatttcgatcgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgccgcggctacaagttctcgacgtacgccacgtggtggatccgccag
gccatcacgcgctcgatcgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagatgaaccgcatctcgcgccagatcctgcaggaaaccggcaacgaa
ccggacccggcaacgctggccgagaagatggagatgccggaagacaagatccgcaagatc
atgaagatcgccaaggaaccgatctccatggaaacgccgatcggtgacgacgacgattcc
catctgggcgacttcatcgaggacaccaacacgctggccccggccgaagcggcgctgcac
ggctccatgcgcgacgtcgtcaaggacgtgctggactcgctgacgccgcgtgaagccaag
gtgctgcgcatgcgcttcggcatcgaaatgagcaccgaccacacgctggaagaggtcggc
aagcagttcgacgtcacgcgtgaacggatccgccagatcgaggccaaggcactgcgcaag
ctgcgccacccgagccgctccgacaagctgaagagtttcctggaaggcaactaa
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