Cupriavidus sp. Agwp_2: LPA45_16515
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Entry
LPA45_16515 CDS
T11307
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cupa Cupriavidus sp. Agwp_2
Pathway
cupa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPA45_16515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cupa03021
]
LPA45_16515 (rpoC)
03400 DNA repair and recombination proteins [BR:
cupa03400
]
LPA45_16515 (rpoC)
Enzymes [BR:
cupa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPA45_16515 (rpoC)
Transcription machinery [BR:
cupa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPA45_16515 (rpoC)
DNA repair and recombination proteins [BR:
cupa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPA45_16515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCZ99780
LinkDB
All DBs
Position
complement(3521299..3525546)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKVTLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDREGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIETGTLLDEDLVELIDNIGVDEVKVRTPLSCDTRYGL
CGKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDANGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPTPVVQATTEGEGDNA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtcaagaag
ccggaaacgatcaactaccgtacgttcaagccggaacgcgacggcctgttctgtgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcattcgtggtgctcgagcctggcatgaccccgctcaagaagagccagatcatg
tcggaagacgactacctggcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgcagagggcatccgtgaactgctgcgcggcatcgacatagagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggctccgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggacggcggccgc
ttcgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgcctg
aagcgcctgctggagctgaaggcgcctgagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggacaacggccgccgcggcaaggcgatgaccggcgcc
aacaagcgcccgctgaagtccctggccgaaatgatcaagggcaagggcggtcgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagcct
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagaccccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgtcccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgctgttcccggccaacggcgacccgtcg
atcgtcccgtcgcaagacgtggtgctgggtctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgaccttcgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgagctggcttcccgcgtgaacgtgcgtatcaccgagtatgagctggtcgac
aaggacgccgaaggcgacgcccgtttcgcacccaaggtcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgccgaagggcctgccgttctcggtgctgaacaag
ccgctcaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggcctg
cgcgagaccgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggcaacccgc
gccggtatctcgatcgccatcgacgacatgctggtgccgcccgccaaggagaagatcatc
gccgaggcctcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaagacgtggtcgaccgcgaaggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggttccgca
gcgcagatccgccagctggccggtatgcgtggcctgatggccaagccggatggctcgatc
attgaaacgccgattacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgctcgtaagggcctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtcgtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtattctcggccgtgtgaccgtggccgacgtggtgaaccctgaaacccag
gaaaccgcgatcgaaaccggcacgctgctggacgaagacctggtcgaactgatcgacaac
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctatggcctg
tgcggcaagtgctatggccgcgacctgggccgcggcgtgttggtgaactccggcgaagcg
gttggcgtgattgccgcccagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaagccaaggca
accggtaccgtgcgttttacggcgaccatgcgttacgtcaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaagcgctgatcaccgacgaccacggccgtgagcgcgag
cgccacaagatcccgtacggcgccacgctgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggacgcgctgactcgaccgatcgtttcggaatacaccggt
acgaccaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
acgggcctgtcgaccctggtggtgatcgacgccaagcgccgcacggctgcaaccaagggc
atccgcccgcaggtgaagctgctcgacgccaacggccaggaagtgaagatcccgggcacg
gatcactccgtgaccatcggcttccaggttggcgcgctgattaccgtgaaggacggccag
caggtgcatgtgggtgaagtgctcgcgcgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgagtggccgaactgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcaccgacctggacggcaatgcccacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgccgcgttcagatcgccgacgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgctcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggcaacctacgagaacctgctgctgggtattaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgtgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
acgccggtggtgcaggcgacgactgagggtgaaggcgacaacgcctga
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