Cupriavidus sp. Agwp_2: LPA45_24400
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Entry
LPA45_24400 CDS
T11307
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cupa Cupriavidus sp. Agwp_2
Brite
KEGG Orthology (KO) [BR:
cupa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cupa03016
]
LPA45_24400
Enzymes [BR:
cupa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LPA45_24400
Transfer RNA biogenesis [BR:
cupa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LPA45_24400
Prokaryotic type
tRNA splicing ligases
LPA45_24400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XDA01895
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All DBs
Position
pCCF_large:complement(1475528..1476757)
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AA seq
409 aa
AA seq
DB search
MTARQHYDVLETGAGKPVKMWTRGVPVEDAARQQLVNTAQMPFIFRHMAVMPDVHLGKGS
TIGSVIPTVGAVIPAAVGVDIGCGMMAVKTSLTASDLPDNLGPLRSAIEHAVPHGRTAQG
RRRDEGAWGSVPSHVDAAWAGMADDFRRITEKYPQLARTNHRNHLGTLGTGNHFIEVCLD
ESQAVWFMLHSGSRGVGNAIGTTFITLAQQDMRRHQANLPDRDLAYLVEGSQHYADYVFA
VSWAQAFARRNRELMMEAVLAAAQRVLRKPFQARLEAVNCHHNYVQKEHHFGKEVLVTRK
GAVSARAGELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRTEAKRRFTVADQKH
ATEGVECRKDAAVIDEIPMAYKDIDAVMAAQSDLVEVVHTLRQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaggcagcactatgacgttctcgagaccggcgccggcaagccggtaaagatg
tggacccgcggcgtcccggtggaagacgccgcgcgccagcagcttgtcaatactgcgcag
atgccgtttatcttccgccacatggcggtgatgccggacgtgcacctcggcaagggatcg
accatcggctcggtgatcccgaccgtgggcgcggtgatcccggccgcggtgggcgtggat
atcggctgcggcatgatggcggtaaagacctcgctgaccgcctccgacctgcccgataac
ctcggcccgctgcgcagcgcgatcgagcacgcggtgccgcatggccgcaccgcgcagggc
cggcgccgcgacgaaggcgcctggggttcggtgccgtcgcacgtcgacgccgcctgggcg
ggcatggccgacgacttccggcgtatcaccgagaaatacccgcaactggcgcgcaccaac
caccgcaaccacctgggcacgcttggcaccggcaaccactttatcgaggtctgcctggac
gagtcgcaagcggtctggttcatgctgcactccggctcgcgcggcgtgggcaatgccatc
ggcaccaccttcatcacgctggcgcagcaggacatgcgccgccaccaagccaacctgccc
gaccgcgatttggcctacctcgtcgaaggctcgcagcactatgcggactatgtcttcgcg
gtgtcgtgggcgcaggcgttcgcgcgccgcaaccgcgagctgatgatggaggcggtgctc
gcggcggcgcagcgcgtgctgcgcaagccgttccaggcgcggctggaagcggtcaactgc
caccataactatgtgcagaaagaacatcacttcggcaaggaagtgctggtgacacgcaag
ggcgcggtcagcgcgcgcgccggcgagctgggcatcatcccgggttcgatgggcgcgcgc
tccttcatcgtgcgcggcaagggcaatccggaatcgttctgctcctgcagccacggcgcg
ggccgcaccatgagccgcaccgaagccaagcgccgcttcaccgtggccgaccagaagcac
gcgaccgaaggggtggaatgccgcaaggacgcggcggtgatcgacgagatcccgatggcg
tacaaggacatcgacgcggtgatggcggcgcagtcggacctggtcgaggtcgtgcatacg
ctgcggcaagtggtgtgcgtgaagggataa
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