Cupriavidus sp. DF5525: ABNX08_014425
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Entry
ABNX08_014425 CDS
T11801
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cupd Cupriavidus sp. DF5525
Pathway
cupd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNX08_014425 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cupd03021
]
ABNX08_014425 (rho)
03019 Messenger RNA biogenesis [BR:
cupd03019
]
ABNX08_014425 (rho)
Transcription machinery [BR:
cupd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABNX08_014425 (rho)
Messenger RNA biogenesis [BR:
cupd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABNX08_014425 (rho)
SSDB
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Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XGJ16704
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All DBs
Position
1:3108143..3109405
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AA seq
420 aa
AA seq
DB search
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GNPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFISDMDEVQAMEFIMDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgacagaactcaaatcgcttcacgtgtctgcgcttctcgaaatggcggctacg
ctcgagatcgacaacgcacagcggatgcgcaaacaggaactgatgtttgcgatcctgaag
aagcgcgccaagatgggcgaaaccatcttcggagacggcacgctggaagttctgcctgac
ggcttcggcttcctgcgctcgccggagacttcgtacctggccagcacggacgatatctat
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgattcgatcgaaggcgag
gtacgcacgcccaaggacggcgagcgctactttgcgctggtgaaggtggacaaggtcaac
gggaacccgcccgaggcggtcaagaaccgcatcatgttcgagaacctgacgccgctgcac
ccgaaccggccgctcacactcgaacgcgatatcaaggcggaagaaaacatcaccggccgc
atcatcgacatgatcgcgccgatcggccgcggccagcgcgcgctgctggtggcctcgccc
aaatccggcaagaccgtgatgctgcaacacattgcacacgcgatcgccaacaatcatccg
gaagccgacctgttcgtgctgctgatcgatgagcgtccggaagaagtgaccgagatgcag
cgttcggtgcgcggcgaagtggtcgcgtccaccttcgacgaaccggccatccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaactgaagcgtgacgtg
gtgatcctgctggactcgatcacgcgcctggcgcgcgcgtacaacacggtggtgccggcc
tcgggcaaggtgctgaccggcggtgtggacgccaacgcgctgcagcgcccgaagcgcttc
ttcggcgcggcgcgcaacctggaagaaggcggttcgctgaccatcatcgccaccgcgctg
atcgaaaccggcagccgcatggacgatgtgatctatgaagagttcaagggcaccggtaat
atggaagtgcacctggagcgccgcctcgcggagaagcgcgtctatccgtcgatcaacctg
aacaagtccggcacacggcgcgaagaactgctgatcaagccggaaatcctgcagaagatc
tgggtgctgcgcaagttcatctccgacatggacgaagtgcaggcgatggaattcatcatg
gacaagatgaaggccacgaaaaacaacgcggagtttttcgatatgatgcgcagaggcggc
taa
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