Cupriavidus sp. EM10: KLP38_02355
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Entry
KLP38_02355 CDS
T10452
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupe Cupriavidus sp. EM10
Pathway
cupe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLP38_02355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupe03019
]
KLP38_02355
Enzymes [BR:
cupe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLP38_02355
Messenger RNA biogenesis [BR:
cupe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KLP38_02355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Sacchrp_dh_NADP
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QWE94863
LinkDB
All DBs
Position
1:506065..507708
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AA seq
547 aa
AA seq
DB search
MSFSDLGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLADSAARNPAPRGGRPQVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN
PQIEALKRGVDIVVATPGRLLDHVSQRTIDLSHVELLVLDEADRMLDMGFIHDIRKILNV
LPAKRQNLLFSATFSDDIRGLADRLLNNPASIEVARRNTTAETVAQRVFPVDRERKRELL
AHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKAGTL
RLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGL
LRDIERLIKRQIEQVTLPGFEVDPSIAAEPIQKGRQQRGGPQQGRGGQPRGNGGNGGNGG
NGGGNANGGERRAPRAPQGQRQESAGQPSQPRQPRPAQGAQPARGDGRQGNGGGKGNGNG
AGNGAGTGAAKPAGQRPQQARAQQPRQQQARPQQPRPAQDAAAAAPARNRRPAPQAALLG
GSRKPAP
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttccgatctcggcttgtccgacaagctggtgcgtgccgtggccgaacagggc
tacaccacgccgaccccgattcaggcgcaagccattcccgcaattctgaaaggtggcgac
cttctcgccggtgcccagaccggcactggcaagaccgccggcttcacgctgccgatgctg
cagctgctggccgattcggccgcccgcaacccggccccgcgcggcggccgtccgcaggta
cgcgccctggtgctgacccccacacgcgaactggccgcccaggtcgaggaaagcgtgcgc
aactacggcaagtacctgaagctgcgctcgatggtgatgttcggcggcgtcggcatcaat
ccgcagatcgaagcgctcaagcggggcgtggacatcgtggtggccacacccggccggctg
ctcgatcacgtgtcgcagcgcaccatcgacctgtcgcacgtggaactgctggtgctcgac
gaagccgaccgcatgctcgacatgggtttcatccacgacatccgaaagatcctgaacgtg
ctgccggccaagcggcagaacctgctgttctcggccacgttctcggacgatatccgcggg
ctggccgaccgcctgctgaacaacccggcctcgatcgaggtggcccgccgcaacaccacg
gccgaaaccgtggcgcagcgcgtgttccccgtcgaccgcgaacgcaagcgcgaactgctg
gcccatctggtacgccagcacgactggcaccaggtgctggtgttcacgcggaccaagcat
ggcgcgaaccgcctggcggaacagctgaccaaggacggactgtccgcgctggccatccac
ggcaacaagagccagtcggcccgcacgcgcgcgctgaccgaattcaaggccggcacgctg
cgcctgctggtggccaccgacatcgccgcacgcggcatcgatatcgatcagctgccgcac
gtggtgaacttcgacctgcccaacgtgcccgaggactacgtgcaccgtatcggccgcaca
ggtcgcgcgggcgccgaaggcgaggcgatctcgctggtctgcgtcgacgagcacggcctg
ctgcgcgatatcgagcggctgatcaagcgccagatcgaacaggtgacgctgcccgggttt
gaagtggacccgagcatcgcggccgagccgatccagaagggccgccagcaacgtggcggc
ccgcagcagggccgtggcggccagccgcgcggcaatggcggcaatggcggcaacggcggc
aacggcggtggcaatgccaacggcggcgaacgccgtgcgccgcgcgctccgcaaggccag
cgccaggaatcggcgggccagccgagccagccgcgccagccgcgtcccgcgcagggcgcg
cagcctgcgcgtggcgatggccgccaaggcaacggcggcggcaagggcaacggcaacggc
gcaggcaatggagcaggtactggcgccgccaagccggcaggccagcgtccgcagcaggca
cgtgcccagcagccgcgccagcagcaggctcgcccgcagcagccgcgtcccgcacaggat
gccgccgctgcagcgccggcccgcaatcgccgcccggcaccgcaggccgcactgctcggt
ggcagccgcaagccggctccctga
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