Cupriavidus sp. EM10: KLP38_11345
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Entry
KLP38_11345 CDS
T10452
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cupe Cupriavidus sp. EM10
Pathway
cupe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLP38_11345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupe03019
]
KLP38_11345
03009 Ribosome biogenesis [BR:
cupe03009
]
KLP38_11345
Enzymes [BR:
cupe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KLP38_11345
Messenger RNA biogenesis [BR:
cupe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KLP38_11345
Ribosome biogenesis [BR:
cupe03009
]
Prokaryotic type
rRNA processing factors
KLP38_11345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QWE93569
LinkDB
All DBs
Position
1:2366877..2370008
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRAAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQDINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEDSTASYRMAEAAAKELEADTSYSSRKKEDARPRQEAAVKGITPDAP
APVSVPRPERAPKPEATPAARPAPATQPVAGGGFFAWLKGLFGANPAPAPVAEPVKPAAE
AQARGEGRQGRGERGQRGERGERGEGRQGRGEPRGERGERGERGERQGRGQRGERTERAE
RGERADAQRGEAREQREPREQREPRGERQPRGERQPREAQQATPAVAQGGERTEARRERN
QERRERQRERQRERAESRETEENLNVEGTAPQSAFEAAQAAPAVIAAVDVPEGAFGDAAT
AEAGEGEERRRRNRRGRNRYRRDREDGANLEVNEGSLAEVSAGVTESEEESASVQPAEVA
QVAQQAAPAPVAQTVAPAEAVAVVREPVEHAEPVKPAPAAEPVFAAVSEPQPAPVVTPAP
AYQAVETAAAEAPAIQAPAVEAPAPVATAPVVPEPVVTTPEVIAAPVPAVEAPAPAAVAQ
ATVTAPAATSTPALESMLATAGLEWVRTDSAKHAAAQEAAARIAPAPRVPRERKPLPPLP
EGPMVLVETGGQQREMAQQQQQQ
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcaacaggaggagttgcgcgtcgcgatcgtcgat
ggtcagaaactgatcgacatcgacatcgaaactgccgggcgcgaacagcgcaagggcaac
atctacaagggtgtcattacccgcatcgagccatcgctggaagcctgcttcgtcaattac
ggcgaagagcgccacggcttcctgccgttcaaggaagtggcccgcgccttcttcaaggac
ggcgtggacgtgcgcaacgcgcgcatccaggacgccctgcatgaaggccaggaactgatc
gtccaggttgaaaaggaagaacgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagacgatggcgcagctgcaggtgccg
gaaggcatgagcatcatcgcccgcactgccggcatcggccgtgccgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgccggcgacaac
aaggccccgctgctgatctacctggaatcgagcctggttatccgggccatccgcgattac
ttccagcccgatatcggcgagatcctgatcgataccgacgagatctacgagcaggcccgc
gccttcatgagcgtggtcatgcccgacaacatgagccgcgtgaagaagtaccgcgacgac
gtgccgctcttctcgcgtttccagatcgagcaccagatcgaatcggcgtactcgcgcatg
gtgatgctgccgtccggcggtgccatcgtgatcgaccataccgaagccctcgtgtcggtt
gacgtgaactcggcccgcgccaccaagggtgcggacatcgaggaaaccgcgctgcgcacg
aacctggaagccgccgacgaaatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtccggcaaggcccagaaggacgtggaaacgcgc
ctgaaggacgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcacatc
acctgcccgcgctgcaatggaacaggtcatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgccatccactgccag
gtgccggtggaagtggccgctttcctgctgaacgagaagcgccaggacatcaacctgatc
gaactgcgcttcaaggtcaatgtgctgctgatcccgaacaagcatctggagacgccgcat
tacaagctggagcgcctgcgccacgacgatccgcgcctggaagactcgaccgccagctat
cgcatggccgaggccgccgcgaaggaactggaagccgacacgagctacagcagccgcaag
aaggaagatgcgcgtccgcgccaggaagcagccgtcaagggcatcacgcccgacgcgccg
gccccggtgtcggtgccgcgccccgagcgcgcaccgaagccggaagccaccccggccgcc
cgtcctgcaccggctacccagccggtggccggcggcggtttctttgcctggctgaagggt
ctgttcggcgcgaatccggcaccggcccccgtggccgagccggtgaagccggccgccgaa
gcccaggctcgcggcgaaggccgccagggccgcggcgagcgcggccagcgtggtgaacgc
ggcgagcgtggcgaaggccgccagggccgcggcgaaccgcgcggcgagcgtggtgaacgt
ggcgagcgcggcgagcgccagggtcgtggccagcgcggcgagcgcacggaacgtgccgaa
cgcggcgaacgcgccgatgcgcaacgcggcgaggcccgcgagcaacgggaaccgcgcgaa
cagcgcgagccgcgtggcgagcgtcaaccgcgtggcgaacggcagccgcgtgaagcccag
caggccacgccggccgtcgcccaaggcggcgagcgcacggaagcccgccgggaacgcaac
caggaacgccgcgagcgtcaacgcgaacgccagcgcgagcgcgccgagtcccgcgagacc
gaggaaaacctgaacgttgaaggcactgcgccgcaatcggcattcgaggcagcccaggcc
gcaccggccgtcatcgctgccgtggatgtgccggaaggtgcattcggcgatgctgcaacg
gcagaagccggtgaaggcgaagagcgccgccgccgcaatcgtcggggtcgcaaccgctac
cgccgcgaccgcgaggacggtgccaacctcgaagtcaacgaaggcagcctggccgaagtc
agcgccggcgtgaccgagtcggaagaagaatcggcatcggtgcagccggccgaggtggcc
caggtggcccagcaggctgccccggcaccggtggcacagaccgtggcaccggcggaagcc
gtggccgtggtccgcgagcccgtcgagcatgccgagcccgtcaagccggccccggccgcc
gagccggtcttcgccgccgtgagcgagccgcaaccggccccggtcgtgacgcctgccccg
gcctatcaggccgtggagacggccgctgccgaagccccggccatccaggcgcctgccgtg
gaagcgccggcaccggttgctaccgcaccggtggtgcccgagcccgtcgtcacgaccccg
gaagtgatcgcggcaccggttcccgccgtggaagctccggcaccggccgccgttgcgcag
gccaccgtcactgctccggctgccacgagcacgccggccctggagtcgatgctggcgacc
gccggcttggagtgggtgcgcactgacagcgccaagcacgccgccgcgcaggaagccgcc
gcgcgcatcgcaccggcaccgcgcgtgccgcgcgagcgcaagccgctgccgccgctgccg
gaaggcccgatggtcctggtggaaaccggtggccagcagcgcgaaatggcccagcaacag
cagcagcaataa
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