Cupriavidus sp. EM10: KLP38_11970
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Entry
KLP38_11970 CDS
T10452
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupe Cupriavidus sp. EM10
Pathway
cupe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLP38_11970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupe03019
]
KLP38_11970
Enzymes [BR:
cupe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLP38_11970
Messenger RNA biogenesis [BR:
cupe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KLP38_11970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QWE93662
LinkDB
All DBs
Position
1:complement(2500294..2501814)
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AA seq
506 aa
AA seq
DB search
MTMTNTPDQTPAAEQTFESFGLDARILRALSDQGYTKPTPIQAQAIPVVLLGKDVMGAAQ
TGTGKTAGFALPIIQRLLPMANASASPARHPVRALMLTPTRELADQVYDNVARYAQHTDL
RSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDM
GFLPDLQRIINLLPAQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVV
YSVPDGHKQAAVVHLLKQRATEQQSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKT
QTERMQTLDGFKSGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAG
ASGDALSIHVPGNDDRLLADIEKLIKRSVPRGTLEGFDPTGERARQEETDRRRQRSDVRR
ARDNGAAGGSSGEREEAAPRRRRTEPNGGPAFRPSDDPFFSRPYEPSGNYTPAPKTEDQL
AAALTRGRQSPKRPVAALLGGAPRKS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgaccaacaccccagaccagaccccagcagcagagcagacgttcgagagcttc
gggctggatgcgcgtatcctgcgcgccttgtccgaccagggctacaccaagcccacgccg
atccaggcgcaggccattccggtggtgctgctgggcaaggacgtcatgggcgccgcacag
accggcaccggcaagaccgccggctttgccctgccgatcatccagcgcctgctgccgatg
gccaacgccagcgcatcgccggcccgccatccggtgcgcgcgctgatgctgacgccgacg
cgcgaactggccgatcaggtctatgacaacgtggcgcgctacgcgcagcacaccgacctg
cgcagcaccgtggtgttcggcggcgtcgacatgaatccgcagaccgacgcgctgcgtcgt
ggcgtggaaatcctggtggccacgccgggccgtctgctcgatcacgtgcagcagaaatcg
gtgaacctgtcgcaggtgcagatgctggtgctggacgaagccgaccgcatgctggacatg
ggcttcctgccggacctgcagcgcatcatcaacctgctgccggcgcagcgccagacgctg
ctgttctcggccacgttctcgcccgagatcaagaagctggcatcgagctacctgaagcag
ccggtgacgatcgaggtggcacgcagcaactcgaccaacgagaacgtgcgccaggtggtc
tactcggtgccggacggccacaagcaggccgccgtggtgcatctgctcaagcagcgcgcc
accgagcagcaatcgaagcagtgcatcgtgttcgtgaacagcaagatcggctgctcgcgt
ctggcgcgccacctggagcgcgaaggtatcaacgccgccgccatccatggcgacaagacg
cagaccgagcgcatgcagacgctcgacggcttcaagagcggcacgatcgacgcgctggtg
gctaccgacgtggccgcgcgtggcctggacatcccggccatgccgtgcgtgatcaacttc
gacctgccgttcagcgccgaggactatgtgcaccggatcggccgtacgggccgcgcgggt
gccagcggcgatgcgctgtcgatccacgtgccgggcaacgatgaccgcctgctggccgat
atcgagaagctgatcaagcgcagcgtgccgcgcggtacgctggaaggcttcgacccgacc
ggcgagcgtgcgcgccaggaagaaaccgaccgccgccgccagcgctccgacgtgcgccgt
gcgcgcgacaacggcgctgccggtggaagcagcggcgagcgcgaggaagccgcgccgcgc
cgccgtcgtaccgagcccaatggcggcccggcgttccgtccgtccgacgatccgttcttc
tcgcgtccgtacgagccgtcgggcaactacacgccggcgccgaagaccgaggatcaactg
gccgccgcgctgacgcgtggccgccagtcgcccaagcgcccggtggcggcgctgctgggt
ggcgcgccccgcaagtcgtaa
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