Cupriavidus sp. EM10: KLP38_19965
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Entry
KLP38_19965 CDS
T10452
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cupe Cupriavidus sp. EM10
Pathway
cupe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cupe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KLP38_19965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cupe03400
]
KLP38_19965 (ligD)
Enzymes [BR:
cupe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KLP38_19965 (ligD)
DNA repair and recombination proteins [BR:
cupe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KLP38_19965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QWE97345
LinkDB
All DBs
Position
2:622920..625553
Genome browser
AA seq
877 aa
AA seq
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MAKTAAPDAPLDKYQHKRDFAATPEPSGKRTARARKTSAGNGAHAFVIQKHAARRLHYDF
RLELDGTLKSWAVPKGPSYDPADKRMAVHVEDHPLDYADFEGVIPAGHYGAGTVIVWDRG
EWIPDTDPEAGYRDGKLKFELRGEKLQGHWTLVRMGGKKARDDNAWLLIKERDQYARPAS
EFDVVDAMPDSVLAGTAKAKPKKAAGKEKEPARKTAKKAAGKLPALPAGARKAALPLALA
PQLATLVDTPPADSAQWQYEIKFDGYRIVARIDGDDVRLFTRNGNDWTSKLRPLAAEIAG
LGWPDGWLDGEIVVVDEHGITDFQALQNAFETAHAESIQFYAFDLPWFAGHDLRAVPLAE
RRALLHGLLANHTPGRLRFSDNFEGAPADMLEAACRMKLEGIIGKRVDAPYVSSRAPTWI
KLKCQNRQEFVIGGFTDPKGSRSGLGSLLLGLHDADGKLRYVGNVGTGFDTAMLDALRKQ
LDPLRTDDTPFDPLPRGIKGHWVKPRLVAEVTFGAWTREGRVRHSVFHALRTDKPASAVT
LEAPARPDASSASTRAKSGKTAVKATKAEAAPTKKPTKASKAAIGNVVVSHADRVIDKST
GLTKGDLVGYYASAAGLMLPFLRGRPLALVRAPSGIDGEQFFQRHGDTLHLKGVKALDPE
LWPGHPPLLEIASASAIVEAAQLNVVEFHTWNARARNIDKPDQIVFDIDPGEGVNWREIQ
EAASLVKALLDAMSLQSFLKTSGGKGLHVVVPLSARAGWDAVRDFAQDVVTHMARTIPER
FVAKSGPRNRVGKIFIDYLRNGVGATTAAAFSARARPGIGVSIPVSWDELDDLTGAAQWT
IANVGDRLDELSRHDPWAGHDKVRQTLTQARKLLDSA
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccgcagccccagacgccccgctcgacaagtaccagcacaagcgcgacttc
gcggccacgcccgagcccagtggcaagcgcaccgctcgcgccaggaagacttccgctggc
aacggcgcccatgccttcgtcatccagaagcacgccgcccgccgcctgcactatgacttc
cggctggagctggacggcacgctcaagagctgggccgtgccaaagggccccagctacgat
ccggccgacaagcgcatggcggtgcacgtggaagaccatccgctggactacgccgatttc
gagggcgtgatccctgccggccattacggcgcgggcacggtgatcgtctgggatcgcggc
gagtggattcccgatacggacccggaggccggctaccgggacggcaagctcaagttcgaa
ctgcgcggtgaaaagctgcagggccactggacgctggtgcgcatgggcggcaagaaggcg
cgcgacgataacgcctggctattgatcaaggagcgcgaccaatacgcacggccggcgtcg
gagttcgacgtcgtggatgccatgcccgacagcgtgctggccggcaccgccaaggccaag
ccgaaaaaggcggccggcaaggaaaaggaaccggcgcggaaaaccgcgaaaaaggcagcc
ggcaagctgccggcgctgccggccggtgccagaaaggccgccctgccgctggcgctggcg
ccgcaactggctaccctggtcgacaccccgccggcagactccgcccagtggcaatacgag
atcaagttcgacggctatcgcatcgtggcgcgcatcgacggcgacgatgtgcggctgttc
acgcgcaacggcaacgactggacgtcgaaactgcgcccgctggccgccgagatcgccggg
ctgggctggcccgacggttggctcgacggcgagatcgtggtggtcgacgaacatggcatt
accgacttccaggccttgcagaacgctttcgagaccgcgcatgcggaatcgatccagttc
tatgcgttcgacctgccctggtttgccgggcacgacttgcgcgcggtgccgctggccgag
cgtcgtgccctgctgcacgggctgctggccaatcacacgccgggccgcctgcgcttcagc
gacaacttcgagggcgcccccgccgacatgctcgaggcagcctgccggatgaagctggaa
ggcatcatcggcaaacgcgtggacgccccctacgtcagttcgcgcgcccccacgtggatc
aagctcaagtgccagaaccggcaggaattcgtgattggcggctttaccgacccaaagggc
agccgcagcgggctggggtcgctgctgcttggcctgcacgatgccgatggcaaactgcgc
tacgtcggcaatgtcggcaccggcttcgacacggcgatgctcgacgcgctgcgcaagcag
ctggacccgctgcgcaccgacgataccccgttcgatccgctgccgcgtggcatcaagggc
cactgggtcaagcccaggctggtggccgaggtgacgttcggcgcctggacccgcgaaggc
cgcgtccgccattccgtgttccacgcgctgcgcacggacaagccggcctcggccgtcacg
ctggaggcaccggccaggcctgatgcttccagcgcttccacccgcgcgaaatccggaaag
accgccgtgaaagccaccaaagccgaagccgcccccacgaaaaagccgaccaaggcgtca
aaagccgccatcggcaacgtggtggtcagccacgccgaccgcgtgatcgacaaatccacc
ggcctgaccaagggcgacctggttggctactacgccagcgccgccggcctgatgctgccg
ttcctgcgcgggcggccgctggcgctggtgcgcgcgccttccggtatcgatggcgagcag
tttttccagcgccatggcgacacgctgcacctgaagggcgtcaaggcgctggaccccgaa
ctctggcccggccatccgcctttgctggaaatcgcctcggcatcggccatcgtcgaggcg
gcacagctgaacgtggtggaattccacacctggaacgccagggcgcgcaacatcgacaag
cccgaccagatcgtcttcgatatcgaccctggcgaaggggtgaactggcgcgagatccag
gaggcagccagcctggtcaaggcgttgctggacgcgatgtcgctgcagagcttcctgaag
accagcggcggcaaggggctgcacgtggtggtgccgctgtctgcccgggccggatgggac
gccgtgcgggattttgcccaggacgtagtgacgcacatggcgcggacgattcccgagcgc
tttgtagcaaagagcggcccgcgcaaccgggttggcaagattttcatcgattacctgcgc
aacggtgtcggcgctaccacggccgccgccttctcggcgcgggcgcggcccggcattggc
gtctcgatcccggtcagctgggacgaactggacgacctgaccggcgccgcgcagtggacc
attgccaacgtcggcgaccggctcgacgagctgtcgcggcacgacccctgggccggccac
gacaaggtccggcagaccctgacccaggcccgcaagctgctcgacagcgcctga
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