Cupriavidus sp. P-10: CTP10_R14620
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Entry
CTP10_R14620 CDS
T10694
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cupp Cupriavidus sp. P-10
Pathway
cupp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTP10_R14620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cupp03021
]
CTP10_R14620 (rpoD)
Transcription machinery [BR:
cupp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTP10_R14620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
SPO22
GerE
Sigma70_r4_2
RRN3
Motif
Other DBs
NCBI-ProteinID:
BDB24114
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Position
1:complement(1578189..1580030)
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AA seq
613 aa
AA seq
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MRALIQLGKQRGYLTHADISDHLPENFTDTAAMESIVNTFAEMGVKIYEQTPDAETLLLS
DGPAVASDDQAEEEAEVALSTVDSEFGRTTDPVRMYMREMSSATLLTRKQEVELAKRIED
GLNNMIHAVSACPSTIATILELSERVSTNDMSIDDLVDGLSDESGADVTAAPASDDEAED
TSVSADDEDGDEDDADEGSTQQGGADTDSAQLREECLKRFARVAAQFEVMRGEETADGTQ
SQVFLTARDAVREELRTIRFTAKTIERLCADVQSMVDAVRVVERQVLQLLVERCGMPRED
VVARFPGNETNLAWGQALVAEGRPYSAAVARALPDLESHQQKLIDIQARATLSLAELKSV
NRKMLAAERQMRQAKHEMTQANLRLVISIAKKYTNRGLLFLDLIQEGNIGLMKAVDKFEY
RRGWKFSTYATWWVRQAVTRAIADQARTIRVPVHMIEQINKLNRLSREIMQQTGKEPDPA
VLAERMEMPEEKIRSIMKIAKEPVSMETPVGEDGDTSLGDMIADSDNATPADAALQAGLR
AVVREMLDELTPREAKVLRMRFGIDMASDHTLEEVGKQFDVTRERIRQIESKAMKKLKHP
SRADRLMTYLRDA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgccctgatccagctgggcaaacagcgcggatacctgacccacgcggatatcagc
gaccacctgccggaaaacttcaccgacacggcggcgatggaaagcatcgtcaacacgttc
gccgaaatgggcgtgaagatctacgagcagacgccggatgccgaaacgctgctgctgagc
gacggcccggcggtcgcctccgacgaccaggccgaagaagaagccgaggtggcgctgtcc
acggtcgactccgaattcggccgcaccaccgacccggtgcgcatgtacatgcgcgagatg
agctcggccaccctgctcacgcgcaagcaggaagtcgagctggccaagcgtatcgaagac
ggcctgaacaacatgatccatgcggtttcggcgtgcccgtcgacgatcgcgacgatcctg
gaactgtccgagcgggtgtccaccaatgacatgtcgatcgacgacctggtcgacggcctg
agcgacgagagcggtgcagacgtcaccgcagcccccgcttccgacgacgaggccgaagac
accagtgtcagcgccgacgacgaagacggcgacgaagacgatgccgacgaaggctcgacc
cagcagggcggtgccgataccgactcggcgcagctgcgcgaggaatgcctgaagcggttt
gcgcgcgtggccgcgcagttcgaagtgatgcgcggcgaagaaacggcggacggcacccag
tcgcaagtcttcctgaccgcccgcgacgcggtgcgtgaagaactgcgcacgatccgcttc
accgccaagaccatcgagcgcctgtgcgccgatgtgcagtcgatggtcgatgccgtgcgc
gtggtcgagcgccaggtgctgcaactgctggtcgagcgctgcgggatgccgcgcgaggac
gtcgtggcgcgcttccccggcaatgaaaccaaccttgcctgggggcaggcactggtggcc
gaaggccgcccgtacagcgccgccgtggcgcgtgccctgcctgacctggaatcgcaccag
cagaagctgatcgacatccaggcccgcgccacgctgtcgctggccgaactgaagtcggtc
aaccgcaagatgcttgccgccgagcgccagatgcgccaggccaagcacgagatgacgcag
gccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgcggactgctgttc
ctggacctgatccaggaaggcaatatcggcctgatgaaggcggtggacaagttcgaatac
cgccgcggctggaaattctccacgtacgcgacctggtgggtgcgccaggccgtcacgcgc
gccatcgccgaccaggcccgcaccatccgcgtgccggtgcacatgatcgagcagatcaac
aagctcaaccgcctctcgcgcgagatcatgcagcagaccggcaaggagccggatccggcc
gtgctggccgagcgcatggagatgccggaagagaagatccgctcgatcatgaagatcgcc
aaggagccggtgtcgatggaaacgccggtgggcgaagacggcgacaccagcctgggcgac
atgattgccgactcggacaacgccacgccggccgatgccgccctgcaggcgggcctgcgc
gcggtagtgcgcgagatgctcgacgagctgaccccgcgcgaagccaaggtgctgcgcatg
cgctttggcatcgacatggccagcgaccatacgctggaagaggtcggcaagcagttcgac
gtcacgcgcgagcggatccgccagatcgaaagcaaggccatgaagaagctcaagcacccg
agccgcgctgaccgcctgatgacctacctgcgcgacgcctga
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