Cupriavidus sp. P-10: CTP10_R22570
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Entry
CTP10_R22570 CDS
T10694
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cupp Cupriavidus sp. P-10
Pathway
cupp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTP10_R22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupp03019
]
CTP10_R22570
03009 Ribosome biogenesis [BR:
cupp03009
]
CTP10_R22570
Enzymes [BR:
cupp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CTP10_R22570
Messenger RNA biogenesis [BR:
cupp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTP10_R22570
Ribosome biogenesis [BR:
cupp03009
]
Prokaryotic type
rRNA processing factors
CTP10_R22570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDB24887
LinkDB
All DBs
Position
1:2444606..2447746
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AA seq
1046 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMSQLTVPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEDSTASYKMAEAAAKELEADTSYSSRRKEEAKPRQEAAVKGITPEQP
APVSVPRPERAPRPEAAPAAPPVPATKPVEAGGFIAWLKGLFGARPAPAPVVEPAKPVAA
AESRGAEGRRERGQRGEGRGQRGERGERAERGERAERGERGERQERGDRQPRGQRAERGE
RAERQQGERGEQREGRGERQGRQPRQQEGQATPAVARQAETAQGERAQGERAQGERAEAR
QEGRRERSQERRERQRDRQRERSDLREAEAGEAPQPEAVAAAQALGVLPQAAADEVPAVR
AELPEGAEEFADAADGEERRRRNRRGRNRYRRERDETGQGAQGEGEAALEGAAESEDIAP
ATTQAAPQAAPQAAPQAEPAPQAAVVVAAAESVEAIRIAVPEDVTPAPAAEPAPVAAPQT
VPVAEPAPAAVAVQAEAPAAVTEVIAAVAVPEPVVAAAVEPAPVVAAPAAEPAAAPAQVA
QAAPAASATPAAAPVAMESLEPMLAGAGLQWVHTDADKLRSAQEAAARIAPAPRVPRERK
PLPPLPQGPMILIETKGREVEMASQQ
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaacgcgacgcaacaggaggaattgcgcgtcgccatcgtcgac
ggtcagaaactgatcgatatcgacatcgagactgccgggcgcgaacagcgcaagggcaat
atctacaagggtgtcatcacccgtatcgaaccctcgctggaagcctgcttcgtcaactat
ggcgaagagcgccacggcttcctgccgttcaaggaagttgcccgcgccttcttcaaggaa
ggcatcgacgtgcgcaacgcgcgcatccaggatgccctgcatgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctatctggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagaccatgtcgcagctgacggtgccg
gaaggcatgagcatcatcgcccggaccgcgggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgccggcgacaac
aaggctccgctgctgatctacctggaatccagcctggtcatccgcgccatccgcgactat
ttccagccggatatcggcgagatcctgatcgataccgacgagatctacgaacaggcccgc
gccttcatgagcgtggtgatgcctgacaacatgaaccgcgtgaagaagtaccgggacgac
gtgccgctcttctcgcgcttccagatcgaacaccagatcgagtcggcctactcgcgcatg
gtgatgctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtctccgtg
gacgtgaactccgcccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaggccgccgacgaaatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggagtcgggcaaggcccagaaggacgtggaaacgcgc
ctgaaggatgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgtttc
gggctgatggagctgtcgcgccagcgcctgcgcccgtcgctgtcggagggctcgcacatc
acttgcccgcgctgcaatggcaccggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgccatccactgccag
gtgccggtggaggttgctgccttcctgctgaacgagaagcgccaggaaatcaacctgatc
gagctgcgcttcaaggtcaacgtgctgctgatcccgaacaagcacctggaaacgccgcac
tacaagctggagcgcctgcgccacgacgacccgcgcctggaagacagcaccgccagctac
aagatggccgaggctgccgccaaggaactggaagccgacaccagctacagcagccgccgc
aaggaagaagccaagccgcgccaggaagccgcggtcaagggcatcacgccggaacagccg
gcaccggtctccgtgccgcgccccgagcgcgccccgcgtccggaagctgctccggcagcc
ccgcccgtcccggcgaccaagccggtggaagccggcggctttatcgcctggctgaagggc
ctgttcggcgcgcgtcctgcgcctgcgccggtggttgagccggccaagccggtggcggcc
gccgaaagccgcggcgccgaaggccgccgcgagcgcggccagcgcggcgaaggccgtggc
cagcgtggcgaacgtggtgaacgtgccgagcgcggtgaacgtgccgagcgcggcgagcgt
ggcgagcgccaggaacgcggcgaccgccagccgcgcggacagcgcgccgagcgtggtgag
cgcgccgagcgccagcaaggcgagcgtggcgaacagcgcgaaggccgtggcgagcgccag
ggccgccagccgcgccagcaagaaggccaggccaccccggccgtcgcccgccaggctgaa
accgctcagggtgaacgtgcccagggtgaacgtgctcagggcgagcgcgccgaagcccgc
caggaaggccgccgcgagcgcagccaggaacgccgtgaacgccagcgtgaccgccagcgc
gagcgcagcgacctgcgtgaagccgaggccggcgaagcgccgcagccggaagccgtagcc
gccgcccaggccctgggcgtgctgccgcaagccgccgcagacgaagtgccggccgttcgc
gccgaactgccggaaggtgctgaagagttcgcagacgccgccgacggcgaggaacgccgc
cgccgcaaccgccgcggccgcaaccgctatcgccgcgagcgcgacgagaccggccagggc
gcgcaaggtgaaggcgaagccgccctggaaggcgctgctgagtccgaagacatcgctccg
gcgaccacccaggcggcgccgcaagcagcaccccaggcggccccgcaagctgaaccggca
ccgcaggcagctgtcgttgttgccgccgcggaaagcgtcgaagcgatccgcatcgccgtg
ccggaagacgtgacgccggccccggcagcggaaccggcaccggtagccgcaccccagacc
gtgcccgtggctgagcccgccccggccgccgtggccgtgcaggcggaagctcccgcagca
gtgaccgaggttatcgcagccgtagccgttcccgaaccggtcgtggccgcagcagtggaa
cccgcccctgtcgttgccgcgcccgccgcggagccggccgccgcgcctgcccaggtggcc
caggctgcaccggcagcgtccgctaccccggccgctgcgccggtcgcgatggaaagcctc
gagccgatgcttgcgggcgccggcctgcaatgggtccacaccgatgccgacaaactgcgc
tcggcccaggaagccgctgcccgcatcgcgccggcgccgcgcgtgccgcgcgagcgcaag
ccgctgccgccgctgccccagggaccgatgatcctgatcgagaccaagggccgcgaagtg
gaaatggcgtcgcagcagtaa
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