Cupriavidus sp. P-10: CTP10_R23850
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Entry
CTP10_R23850 CDS
T10694
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupp Cupriavidus sp. P-10
Pathway
cupp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTP10_R23850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupp03019
]
CTP10_R23850
Enzymes [BR:
cupp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTP10_R23850
Messenger RNA biogenesis [BR:
cupp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTP10_R23850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDB25013
LinkDB
All DBs
Position
1:complement(2585793..2587292)
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AA seq
499 aa
AA seq
DB search
MTTTTAPEPTTAGQTAVQTFESFGLDARILRALSDQGYTTPTPIQAQAIPVVLLGKDVMG
AAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAQH
TDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRM
LDMGFLPDLQRIINLLPAQRQTLLFSATFSAEIKRLAASYLKQPVTIEVARSNSTNENVR
QMVYQVEDGHKQAAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINASAIHG
DKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCVINFDVPYSAEDYVHRIGRTG
RAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGFDPTGEKSRQDEAERRRQRGD
LRRARGNGEGEERPRRHEHSGSRQVFRPSDDPFFSRPYEPSASSSQVKPSEEIAAALSRG
RQAPKRPVAALLGGVPRKS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacgaccgcaccagaacccaccaccgcagggcagaccgcggtgcaaaccttc
gaaagctttggcctggacgcgcgcatcctgcgtgccttgtccgaccagggctacaccacg
cccacgccgatccaggcgcaggccattcccgtcgtgctgctcggcaaggacgtgatgggc
gccgcgcaaaccggcaccggcaagaccgccggcttcgcgctgccgatcatccagcgcctg
ctgccgctggccaacgccagcgcctcgccggcacgccacccggtgcgcgccctgatgctg
acgcccacgcgtgaactggccgaccaggtctacgacaacgttgcccgctacgcccagcac
accgacctgcgcagcacggtggtgttcggcggtgtcgacatgaacccgcagaccgatgcg
ttgcgccgcggtgtcgagatcctggtggccacgcccggccgcctgctcgaccacgtgcag
cagaagtcggtgaacctgtcgcaggtgcagatgctggtgctggatgaagccgaccgcatg
ctcgacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggcgcagcgc
cagacgctgttgttctcggcgacgttctcggcggaaatcaagcggctggccgccagctac
ctgaagcagccggtcaccatcgaggtggcgcgcagcaactcgaccaacgagaacgtgcgc
cagatggtgtaccaggtcgaagatggccacaagcaggcggcggtggtgcacctgctcaag
cagcgtgccgaccagggcctgtcccgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcgcctggcacggcacctggagcgcgagggcatcaatgcctccgcgatccacggc
gacaagacccagactgagcgcatgcagacgctggacggcttcaagagcggcaccatcgac
gcgctggtcgccaccgacgtggcggcgcgcgggctcgatatccccgacatgccgtgcgtg
atcaacttcgacgtgccgtacagcgccgaggactacgtgcaccgtatcggccgtaccggc
cgtgcgggtgccagcggcgatgcgctgtcgatctacgtgcctggcaatgacgagcgcctg
ctgtccgatatcgaaaagctgatcaagcgcagcatcccgcgcggcaagctggaaggcttt
gacccgaccggcgagaagtcgcgccaggacgaagccgagcgccgccgccagcgcggcgac
ctgcgccgcgcgcgcggcaacggcgaaggcgaggagcgcccgcgccgccacgagcacagc
ggcagccgccaggtgttccgtccttccgacgatccgttcttctcgcgtccgtacgagccc
agcgccagcagctcgcaggtgaagccgtcggaggaaatcgccgccgcgctgagccgtggc
cgccaggctcccaagcgtccggtcgcggcgctgctgggcggcgtgccgcgcaagtcctga
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