Cupriavidus sp. P-10: CTP10_R28230
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Entry
CTP10_R28230 CDS
T10694
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cupp Cupriavidus sp. P-10
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cupp03016
]
CTP10_R28230
Enzymes [BR:
cupp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CTP10_R28230
Transfer RNA biogenesis [BR:
cupp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CTP10_R28230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BDB25447
UniProt:
A0A388RHZ6
LinkDB
All DBs
Position
1:complement(3064749..3066863)
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AA seq
704 aa
AA seq
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MQLLFEEGGEIRAGTVLNQQGEAYQVELPAGKRTKVKSRDVLLQFAQPSAIELVRQTGDM
VSEIDLDFLWECAPEAEFGFAELAAEYYGAEPGAVQQAALAMALHGNPVYFRRKGRGRYQ
RAPEDQLKAALAALERKRQQALVQAEYEDQLKALTLPESFRNKVLQLLFKPDKNSLEYKA
MDAACTALGMSPMRLMVAAGGVASARALHEAKFLAECFPKGTGFPDTDVPEPSADLPLAE
VEAFSIDDVTTTEIDDALSVTKLPDGKLRIGIHIAAPALGIRRGEPLDVIARQRLSTVYF
PGDKITMLPDPVVERYTLQEGRVCPALSLYVTVDPTVWLITGSETRAEMVPIAANLRHNL
LDDVITEASLADGSGDYPFREALTQLWHFAGYLYDERQKARLASGLRPETHNRADFNFYL
DDQPDGSQRVRIEQRKRGSPLDKIVAELMILANSTWGKLLADNGVPGIYRTQKAWGMHRT
RMQTYPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQILAVAQHGVTAKLVAPFKPKDADLL
AAVADFEGTYAAYADHQSTMERYWCLRWLKQENRERLVAAVLKEGAVRFTEIPLVTRVPE
LVQAQRGTQVLLEIGETDEITLEVSCRVLEIFAGEGVLPEEELESDEEAAEVSAEAAAEA
AAEDAAEQAAQQAAGVSDEAAADAGGDAPAQPSAERDTGGTAAG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgctgttcgaagaaggcggcgagatccgcgccggcaccgtgctgaaccagcag
ggcgaggcttaccaggtggagctgccggccggcaagcgcaccaaggtcaagtcgcgcgac
gtgctgctgcagtttgcgcagccgtcggcaatcgagctggtccgccagaccggcgacatg
gtttccgagatcgacctggacttcctgtgggaatgtgcccctgaggccgagttcggcttc
gccgagctggccgccgagtactacggcgccgagcccggcgcggtgcagcaggcggcgctt
gcgatggcgctgcacggcaacccggtgtacttccgccgcaaggggcgtggccgctaccag
cgcgcgcccgaggaccagctcaaggccgcgctggccgcgctcgagcgcaagcgccagcag
gcattggtgcaggccgaatatgaagaccagctcaaggcgctgacgctgccggaatcgttc
cgcaacaaggtgctgcagctgctgttcaagccggacaagaacagcctggaatacaaggcc
atggacgcggcctgcaccgcgctcggcatgtcgccgatgcggctgatggtggccgccggc
ggcgtcgccagcgcgcgtgcgctgcacgaggccaagttcctcgccgagtgcttccccaag
ggcaccggctttcccgataccgacgtgcccgagccgtccgccgacctgccgctggccgag
gtcgaggcgttctcgatcgacgacgtcaccaccaccgagatcgacgatgcgctgtcggtg
acgaagctgcccgacggcaagctgcgcatcggcatccatatcgccgcgcccgcgctcggc
atccgccgcggcgagccgctcgacgtgatcgcacgccagcgcctgtcaacggtgtacttc
ccgggcgacaagatcaccatgctgcctgacccggtggtagagcgctatacgctgcaggaa
ggccgggtgtgcccggcgctgtcgctgtacgtgacggtggacccgacggtgtggctgatc
accggcagcgagacccgcgccgagatggtgccgattgccgccaacctgcgccataacctg
cttgacgacgtcatcaccgaagcctcgctcgccgacggcagcggcgactacccgttccgc
gaggcgctgacccagctgtggcatttcgccggctacctctacgacgagcgccagaaggcg
cgcctggccagcggcctgcgcccggagacgcacaaccgcgccgacttcaacttctacctc
gacgaccagcccgacggcagccagcgcgtgcgcatcgagcagcgcaagcgtgggtcgccg
ctggacaagatcgtggccgagctgatgatcctggccaacagcacgtggggcaagctgctg
gcggacaacggcgtgcccggcatctaccgcacgcagaaggcgtggggcatgcatcgcacc
cgcatgcagacctacccggcaccgcatgaaggtttgggggtagcccagtacgcgtggagc
acctcgccgctgcgccgctacgtcgacctggtcaaccagtggcagatcctggcggtggcg
cagcatggcgtgaccgccaagctggtggcgccattcaagcccaaggacgccgacctgctg
gcagccgtggctgacttcgaaggcacttatgccgcctatgccgaccaccagtcgaccatg
gagcgctactggtgcctgcgctggctcaagcaggagaaccgcgagcgcctggtcgccgcg
gtgctcaaggaaggcgcggtgcgctttaccgagatcccgctggtcacgcgcgtgcccgaa
ctggtgcaggcgcagcgtggcacccaagtgctgctggagatcggcgagaccgacgagatc
acgctggaagtctcctgccgcgtgctggagatctttgcgggcgagggcgtgttgcctgaa
gaagagctggaaagcgacgaagaagccgctgaagtgtcggccgaagccgctgccgaggcc
gccgcggaagacgccgcagagcaggccgcccagcaggccgcaggggtctcggacgaggcc
gccgcagacgccggtggcgacgcgccggcgcagccgtcggctgagcgcgacaccggcggc
accgccgccggctga
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