Cupriavidus sp. P-10: CTP10_R38040
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Entry
CTP10_R38040 CDS
T10694
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cupp Cupriavidus sp. P-10
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cupp03016
]
CTP10_R38040
Enzymes [BR:
cupp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CTP10_R38040
Transfer RNA biogenesis [BR:
cupp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CTP10_R38040
Prokaryotic type
tRNA splicing ligases
CTP10_R38040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BDB26404
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All DBs
Position
2:407840..409069
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AA seq
409 aa
AA seq
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MTARQHYDVLETGAGKPVKMWTRGVPVEDAARQQLVNTAQMPFIFRHMAVMPDVHLGKGS
TIGSVIPTVGAVIPAAVGVDIGCGMMAVKTSLTASDLPDNLGPLRSAIEHAVPHGRTAQG
RRRDEGAWGSVPSHVDAAWAGMADDFRRITEKYPQLARTNHRNHLGTLGTGNHFIEVCLD
ESQAVWFMLHSGSRGVGNAIGTTFITLAQQDMRRHQANLPDRDLAYLVEGSQHYADYVFA
VSWAQAFARRNRELMMEAVLAAAQRVLRKPFQARLEAVNCHHNYVQKEHHFGKEVLVTRK
GAVSARAGELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRTEAKRRFTVADQKH
ATEGVECRKDAAVIDEIPMAYKDIDAVMAAQSDLVEVVHTLRQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaggcagcactatgacgttctcgagaccggcgccggcaagccggtaaagatg
tggacccgcggcgtcccggtggaagacgccgcgcgccagcagcttgtcaataccgcgcag
atgccgtttatcttccgccacatggcggtgatgccggacgtgcacctcggcaagggatcg
accatcggctcggtgatcccgaccgtgggcgcggtgatcccggccgcggtgggcgtggat
atcggctgcggcatgatggcggtaaagacctcgctgaccgcctccgacctgcccgataac
ctcggcccgctgcgcagcgcgatcgagcacgcggtgccgcatggccgcaccgcgcagggc
cggcgccgcgacgaaggcgcctggggttcggtgccgtcgcacgtcgacgccgcctgggcg
ggcatggccgacgacttccggcgtatcaccgagaaatacccgcaactggcgcgcaccaac
caccgcaaccacctgggcacgcttggcaccggcaaccactttatcgaggtctgcctggac
gagtcgcaagcggtctggttcatgctgcactccggctcgcgcggcgtgggcaatgccatc
ggcaccaccttcatcacgctggcgcagcaggacatgcgccgccaccaggccaacctgccc
gaccgcgatttggcctacctcgtcgaaggctcgcagcactatgcggactatgtcttcgcg
gtgtcgtgggcgcaggcgttcgcgcgccgcaaccgcgagctgatgatggaggcggtgctc
gcggcggcgcagcgcgtgctgcgcaagccgttccaggcgcggctggaagcggtcaactgc
caccataactatgtgcagaaagaacatcacttcggcaaggaagtgctggtgacacgcaag
ggcgcggtcagcgcgcgcgccggcgagctgggcatcatcccgggttcgatgggcgcgcgc
tccttcatcgtgcgcggcaagggcaatccggaatcgttctgctcctgcagccacggcgcg
ggccgcaccatgagccgcaccgaagccaagcgccgcttcaccgtggccgaccagaagcac
gcgaccgaaggggtggaatgccgcaaggacgcggcggtgatcgacgagatcccgatggcg
tacaaggacatcgacgcggtgatggcggcgcagtcggacctggtcgaggtcgtgcatacg
ctgcggcaagtggtgtgcgtgaagggataa
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