Cupriavidus sp. P-10: CTP10_R76160
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Entry
CTP10_R76160 CDS
T10694
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cupp Cupriavidus sp. P-10
Pathway
cupp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cupp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTP10_R76160 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cupp03021
]
CTP10_R76160 (rpoD)
Transcription machinery [BR:
cupp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTP10_R76160 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
GTP_EFTU
Med21
Motif
Other DBs
NCBI-ProteinID:
BDB30199
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All DBs
Position
pMTS2:136692..138722
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AA seq
676 aa
AA seq
DB search
MSATIVGQPVEESVLANPVRDDSASRTIAVTSKTGRRSPKGKIQAVATPLDIASMARQDE
ERQRQMRALIALGRERGYLTHADINDHLPDNFTQTAAMETIVSTFSDMGVAVYEQAPDAE
TLLLSDAAPAAASDDQADEEAEAALSTVDSEFGRTTDPVRMYMREMGASELLTRAGEIEI
AKRVEGGLQDMIQAIAACPSVVSTILADADRIVAGELRIDELVDGISDDVNESEMALESD
DVQVEADASDDDPDGDDAETDAADPEKANAARLEQLTIDSLAIFARVRVLFEQLPDAPVT
GKARSAAVAQLRLEIQRELAPIRFTAKTIDRLCASVHEQVTEVRAIERSILEIAVDRCGM
PREAFVESFPGHETDLEWTSHLAATSRQFGAALERHLPAIQAGQQKLIDIEAGVSLPLQQ
LKRINRQMSAAELKMRQAKRELIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVD
KFEYRRGWKFSTYATWWVRQAVTRALADQARTIRVPVHMIEMINKLNRISREFLQQTGQE
AHPSVLAERMEMSEEKVRSILRIARQPVSLETPVGDDADATLGDMIEDVSASSPAEAVIH
ANMRAAIDEALDGLSPREAKVLRMRFGLDTISDHTLEEVGKQFDLTRERIRQIESKAMRK
LMHPSRADKLRPFLER
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgacgatcgtcggccaacctgtcgaggagagtgtattggcaaatccagttcgc
gacgattcagcatcccgcacgatcgcggtcacgtcaaagaccggccgccgctctccaaaa
ggaaagatccaggcggtcgcaacaccgctggacatcgcgtccatggcgcgccaggacgag
gagcgtcaacgccagatgcgcgcgctgatcgcgcttggccgtgagcgcggctatctcacc
cacgcggacatcaacgatcacctgcccgacaactttacgcaaactgctgcgatggagacg
atcgtcagcacattcagcgacatgggggtggccgtgtacgagcaggcgccggacgcggag
acgctcctgttaagcgatgccgcgcctgccgcggcatccgacgatcaggcggatgaggaa
gcggaagctgcactgtcgaccgtcgattccgaattcggccgcactactgatccggtccgg
atgtacatgcgagaaatgggcgccagtgaactgctgactcgcgccggcgaaatcgagatc
gcaaaacgcgtcgaaggcggcctgcaggacatgattcaggcgatcgccgcgtgtccgtca
gtcgtgtccacgattcttgccgatgcggaccgcatcgttgccggcgaactgcgtatcgac
gaactggtcgatggcatcagcgacgacgtgaacgaaagcgaaatggcgctagagtccgat
gacgttcaagtggaagcagacgcctccgacgatgacccggatggtgatgacgctgaaacg
gacgccgcggatccggagaaagcgaacgcagcccgcctcgaacaactcacgatcgacagt
cttgcgattttcgcgcgcgtgcgtgtactgttcgagcagttgccggatgcacccgttact
gggaaagcccgttccgcagccgttgcgcaattgcgcttggagatccagcgtgaactggct
ccgatccgctttacggccaagactatcgaccgcctgtgtgccagtgtgcacgaacaggtt
accgaggttcgtgcaatcgagcgcagcatcctggagatcgccgtcgaccgttgcggcatg
ccacgcgaggcgtttgtcgagtcgttcccgggccacgagaccgaccttgaatggaccagc
catctggcggcgacttcgcggcagtttggcgcagcgctcgagcgacatctgccggccatt
caggccggccagcagaaactcatagacatcgaggccggggtctcgctgccgctccagcag
ctcaagcggatcaaccgccagatgagcgccgcggagttgaaaatgcggcaggccaagcga
gaactgatcgaagcgaatcttcgtcttgtcatttcaatcgccaagaaatacgtgaaccgc
ggcatgcagttcctggatctaatccaggaaggcaatatcggcctgatgaaggcggtggac
aagttcgaataccggcgcggctggaagttttcgacgtacgccacttggtgggtccggcag
gctgtcacgcgtgcgcttgccgatcaggcgcgaaccattcgtgtgccggtccacatgatc
gagatgatcaacaagctgaatcggatttcgcgcgaattcctgcaacagacgggacaggaa
gcgcatccctccgtcctcgccgagcgcatggagatgtccgaggaaaaagtgcgcagtatc
ctcaggatcgcgaggcaacctgtctcgctcgagacccctgtgggcgacgacgccgacgcg
acgctcggcgacatgattgaggatgtctctgcgagttcaccggctgaggccgtgattcac
gcgaacatgcgcgccgcgatcgatgaggcactcgacgggttatcgccgcgcgaggccaag
gtcctgcggatgcgattcgggctcgatacgatctcggaccacacgcttgaagaggtcggc
aagcagttcgacctgacccgcgagcggatccgtcagattgagagcaaggcgatgcgcaag
ctgatgcatcccagtcgtgctgacaagttgaggccctttctcgagcgctga
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