Cupriavidus sp. ISTL7: IC580_03790
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Entry
IC580_03790 CDS
T10433
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cupr Cupriavidus sp. ISTL7
Pathway
cupr03030
DNA replication
cupr03430
Mismatch repair
cupr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cupr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IC580_03790 (dnaE)
03430 Mismatch repair
IC580_03790 (dnaE)
03440 Homologous recombination
IC580_03790 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cupr03032
]
IC580_03790 (dnaE)
03400 DNA repair and recombination proteins [BR:
cupr03400
]
IC580_03790 (dnaE)
Enzymes [BR:
cupr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IC580_03790 (dnaE)
DNA replication proteins [BR:
cupr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IC580_03790 (dnaE)
DNA repair and recombination proteins [BR:
cupr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IC580_03790 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Ski2_N
Motif
Other DBs
NCBI-ProteinID:
QQE07518
LinkDB
All DBs
Position
1:877715..881227
Genome browser
AA seq
1170 aa
AA seq
DB search
MSSPRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRFYKEARGG
GVKPIVGADVWLTNADDRDKPARMLLLVQDRRGYLNLCVLLSRAWLSNQYRGRAELEPGW
FEEPGEDGLPLSSGLIALSGAMGGDVGQALANGNEAAAQRAARHWATVFPQRYYIELQRA
GHPGTEAYVQRAVQLAAALQLPVVATHPVQFMTPDDHTAHEARVCIAEGELLANPRRARR
FTTDQYFKTQDEMCALFADIPSALQNAVQIARRCNLTLELGKPRLPLFPTPDGMSLDDYL
VHMSKEGLERRLEVLFPDEATREAKRPEYYARLEFETGIIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRD
RVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
IEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPGKADWNCSQ
IPLDDPAAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVSLYRPGPMDLIPS
FCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKK
KPEEMAKHRELFREGAAKNGLSADKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLK
AHHPAEFMAANMSLAMDDTDKVKILYEDCRANGLRVLPPDVNASEYRFAPTDAKTIRYGL
GGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDTLHPNRA
QLLASVPRAMEAAEQKAESANQVSLFDLMDDDGDAHRPELIDEPAWTPKRMLQEEKQALG
YYFSGHLFDAYRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKMVAGVITGIRTQMTQR
GKMLIVLLDDGTGQIEMTVFNELFDANRHMFREDELLIAQGNARHDTFTGGVRFTAETVM
DLTTARIRHARALKLSLNGNSSTAMLRELLTPHLAQSAGGAGLPVCIQYASASAVCEAVL
GQAWQVVPSDDTLAALRAALSPECVSTLYE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgccccgcttcgtacatctccgtctccattccgaatactcgatcgtcgacggc
atcgtccgcctcgaggatgcggtcaaggccgccgccgccgatggcatgggcgcgctcgcg
ctgaccgacctggccaatgccttcggcctgatccgcttctacaaggaggcgcgcggcggc
ggcgtcaagccgatcgtcggcgcggacgtctggctgaccaacgccgacgatcgcgacaag
cccgcgcgcatgctgctgctggtgcaggaccggcgcggctatctgaacctgtgcgtgctg
ctgtcgcgcgcctggctgtcgaaccagtaccgcggccgcgccgagctcgagcccggctgg
ttcgaggaacccggcgaggacggcctgccgctgtcgagcggcctgatcgcgctgtccggc
gcgatgggcggcgacgtcggccaggcgctggccaacggcaacgaggcggccgctcagcgc
gccgcgcggcactgggcgaccgtgttcccgcagcgctattacatcgagctgcagcgcgcc
ggccatcctggcaccgaggcctatgtgcaacgcgcggtgcagctggccgcggcgctgcag
ctgccggtggtcgcgacgcatccggtccagttcatgacccccgacgaccataccgcgcac
gaggcgcgcgtctgtatcgccgagggcgagctgctggccaatccgcgccgcgcgcgccgc
ttcaccaccgaccagtatttcaagacgcaggacgagatgtgcgcgttgttcgccgacatc
ccgtcggcgctccagaacgcggtgcagatcgcgcgccgctgcaacctgacgctcgagctc
ggcaagccgcgcctgccgctgttcccgacgccggacggcatgtcgctggacgactatctg
gtgcacatgtcgaaggarggsctggagcgccgtctggaggtgctgttccccgacgaggcg
acgcgcgaggcgaagcgccccgagtattacgcgcggctggagttcgagaccggcatcatc
atcaagatggggttccccggctacttcctgatcgtggcggacttcatcaactgggccaag
aacaacggcgtgccggtcggtccggggcgcggctcgggcgccggctcgctggtcgcctac
gcgctgggcatcaccgacctcgatccgctgaagtacgcgctgctgttcgagcgtttcctg
aatccggagcgggtgtcgatgcccgacttcgatatcgacttctgccagcacggccgcgat
cgcgtgatccagtacgtcaaggagaagtacggcaaggacgcggtgtcgcagatcgccacc
ttcggcaccatggcggccaaggccgcggtgcgcgacgtcggccgcgtgctcgatctgggc
tacaacttcgtcgacggcgtggccaagctgattccgttcaagcccggcaagctggtgacg
atcgaggaggccaagaaggaagagccgctgctgaccgagcgcgagaacaacgaggaggaa
gtgcgccagctgctcgagctggcgcagcgcgtcgaaggcatgacccgcaacgtcggcatg
cacgccggcggcgtgctgatcgcgccgggcaagctgacggacttctgtccgctgtacacg
cagggcggccagaacgacggcatgagcggcgtggtcagccagtacgacaaggacgacgtc
gaggccgccggcctggtcaagttcgactttctgggcctgaccacgctgacgatcctcgac
tgggccgagcgctatatccgccggctcgatccgggcaaggccgactggaattgcagccag
atcccgctcgacgatccggccgccttcgacatcctgaagtccgccaacacggtagcggtg
ttccagctggaaagccgcggcatgcagggcatgctcaaggacgccaagcccgaccgcttc
gaggacatcatcgcgctggtgtcgctgtaccgcccgggtccgatggacctgatccccagt
ttctgcgcgcgcaagcacgggcgcgagaaggtggaatatccggacccgcgcgtcgaaccc
gtcctgaaagagacctacggcatcatggtctatcaggagcaggtgatgcagatggcgcag
atcatcggcggctactcgctcggtggcgccgacctgctgcgccgcgcgatgggcaagaag
aagcccgaagagatggccaagcatcgcgagctgttccgcgagggcgcagcgaagaacggg
ctgtcggccgacaaggccgacgagatcttcgacctgatggagaagttcgccggctacggc
ttcaacaagtcgcacgcggccgcctatgccttgctggcctactacaccgcatggctgaag
gcgcatcatccggccgaattcatggcggccaacatgtcgctggcgatggacgacaccgac
aaggtcaagatcctctacgaggattgccgcgccaacgggctgcgcgtgctgccgccggac
gtcaatgccagcgaataccgtttcgccccgaccgatgcgaagacgatccgctacggactg
ggcggcatcaagggctcgggccagggcgcgatcgaagacatcctgcgcgcgcgcgaggaa
cggccctttaccgacctgttcgacttctgcgagcgtgtcgaccgccgccaggtcaaccgc
cgcacgatcgaggcgctgatccgcgccggcgccttcgacacgctgcatccgaaccgcgcc
cagctgctggcctcggtgccgcgcgcgatggaggcggccgagcagaaggccgaatcggcc
aaccaggtgtcgctgttcgacctgatggacgacgacggcgacgcgcaccgtcccgagctg
atcgacgagccggcgtggacgcccaagcgcatgctgcaggaagaaaagcaggcgctcggc
tactacttctccggccacctgttcgatgcctatcgcgacgaggtgcggcgcttcgtcaag
ggcacgctggccgcgctggaaaaggaagtgcagggcaacggcggcggctatggccgcgac
gtgcgcggcaagatggtcgccggcgtgatcaccggcatccgcacccagatgacccagcgc
ggcaagatgctgatcgtgctgctcgacgacggcaccggacagatcgagatgacggtgttc
aacgagctgttcgacgccaaccggcacatgttccgcgaggacgaactgctgatcgcgcag
ggcaatgcgcgccacgacaccttcaccggcggcgtgcgcttcaccgcggaaacggtgatg
gatctgaccactgcccgcatccgccatgcgcgcgcgctgaagctgtcgctgaacggcaat
tcgtcgaccgcgatgctgcgcgaactgctgaccccgcatctggcgcaatccgccggcggc
gcgggcttgccggtctgcatccagtacgcgagcgcctcggcggtctgcgaggcggtgctg
ggccaggcctggcaggtggtgccgtcggacgacacgctggcggcgctgcgcgcggcgctg
tcgccggagtgcgtcagtacgctgtacgagtga
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