Cupriavidus sp. ISTL7: IC580_08905
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Entry
IC580_08905 CDS
T10433
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cupr Cupriavidus sp. ISTL7
Brite
KEGG Orthology (KO) [BR:
cupr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cupr03009
]
IC580_08905 (rlmD)
Enzymes [BR:
cupr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IC580_08905 (rlmD)
Ribosome biogenesis [BR:
cupr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IC580_08905 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_15
Methyltransf_23
TRM5-TYW2_MTfase
TRAM
RrnaAD
CMAS
Methyltransf_11
UPF0020
MTS
TPMT
Cons_hypoth95
Methyltransf_12
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QQE05981
UniProt:
A0A7T4Y5I5
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All DBs
Position
1:complement(2072065..2073549)
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AA seq
494 aa
AA seq
DB search
MSQAVSSPQSAPEPVQQPAASPAPVRKRGGAAASAAPSAAASATGTEAQAHPTVKIDSLD
MEARGVGRLVNEDGTPGKVIFVEGALPGETVAYQSYRRKPSFEQAHLVEVRASSVMRVQP
GCVNFGVCGGCSMQHLDARAQLAIKQRVLEDNLWHLGKVRPEMVFRPIAGPDWGYRYRAR
LTVRHVAKKGGVLVGFHERKSSYVADMKSCEVLPPHVSAMLLPLRELVAGLSIRDRMPQI
ELAVGQDVTALVLRILEPLNDADRDLLRAFADRHNVQFWLQPKGPDTVVPFYPLDRELAY
TLPEFGIRMPFKPTDFTQVNHQINRVLIKRALRLLDAQPGDRLLDLFCGIGNFTLPLATQ
GREVMGIEGSEALTARALANADYNGLAHKVAFACRNLFEVTAEDMAALGRFDRWLVDPPR
EGALAVSKALAELAQAGSDVLPHRIVYVSCNPATLARDAGLLVHEAGYRLRGAGVVNMFP
HTSHVESIAVFERA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcaagccgtgtcttccccgcaatccgcccctgagccggtgcaacagccggctgcc
tcgcccgctcctgtccgcaagcgtggcggcgccgccgcatcggctgccccatcggctgcc
gcatcggccaccggtaccgaggctcaggcccatccgaccgtgaagatcgacagcctcgac
atggaggcgcgcggcgtcggacggctggtgaacgaggacggcacgcccggcaaggtgatc
ttcgtcgagggcgcgctgcccggcgagacggtggcctaccagagctatcgccgcaagccg
agcttcgagcaggcgcatctggtcgaggtccgcgcttcgtcggtgatgcgggtgcagccg
ggctgcgtcaatttcggcgtctgcggcggctgttcgatgcagcacctggatgcgcgcgcc
caattggcgatcaagcagcgcgtgctcgaggacaacctgtggcatctgggcaaggtgcgg
cccgagatggtcttccggccgatcgccgggcccgactggggctatcgctaccgcgcccgg
ctgacggtgcgccacgtggcgaagaagggcggggtgctggtcggctttcacgagcgcaag
agcagctatgtcgccgacatgaagtcgtgcgaggtgctgccgccgcatgtgtccgcgatg
ctgctgccgctgcgcgagctggtggccggattgtcgattcgcgaccgcatgccgcagatc
gaactggcggtcggccaggacgtcaccgcgctggtgctgcggatcctggagccgctgaac
gatgccgatcgcgatctgctgcgcgccttcgccgaccgccacaacgttcagttctggctg
cagcccaagggcccggacacggtggtgccgttctatccgctcgaccgcgaactggcctat
acgttgccggaattcggcattcgcatgccgttcaagccgaccgatttcacccaggtcaac
catcagatcaaccgcgtgctgatcaagcgcgccctgcgtctgctcgatgcccagccgggc
gaccggctgctggacctgttctgcggcatcggcaacttcacgctgccgctggcgacgcag
gggcgcgaggtgatggggatcgagggcagcgaggcgctgaccgcgcgggcgctggccaat
gccgactacaacggcctcgcccacaaggttgctttcgcctgccgcaacctgttcgaggtc
accgccgaggacatggcagcgctcgggcggtttgaccgctggctggtcgacccgccgcgc
gaaggcgcgctggccgtcagcaaggcgctggccgaactggcgcaggccggcagcgacgtg
ttgccccaccgtatcgtctatgtgtcatgcaatccggccacgctggcgcgtgatgccggc
ctgctggtgcacgaggcgggctatcggctgcgcggcgcgggcgtggtcaacatgttcccg
catacctcgcacgtcgaatcgatcgcggtgttcgagcgcgcctag
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