Cupriavidus sp. ISTL7: IC580_09775
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Entry
IC580_09775 CDS
T10433
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cupr Cupriavidus sp. ISTL7
Pathway
cupr03018
RNA degradation
Brite
Enzymes [BR:
cupr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IC580_09775
Messenger RNA biogenesis [BR:
cupr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC580_09775
Ribosome biogenesis [BR:
cupr03009
]
Prokaryotic type
rRNA processing factors
IC580_09775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QQE06114
UniProt:
A0A7T4Y5M8
LinkDB
All DBs
Position
1:2272476..2275715
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKEGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLTVPDGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAALDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYEQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESNKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQDINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRKKEDAKPRQEAAVKGITPEQP
APVSVPRPERAPRQEAPAAKPAAPAAATQPIGSGGFIAWLKGLFGARPAPAPVQPAKPAA
AEARTGGNGEGGRRERGQRGERGQRSERGERGDRTERAERGDRAERGERQAGRGQRAERG
ERAERGERVERGERGDRAERQPRQPRQGEAQPAQAEARQPDAVQGERGERTERSENRRER
NQERRERQRERQRERSEARAADAELTDVEAGVPTQPVPVAALTDEAGAVRAELPETADTA
ENGEGEERRRRNRRGRNRYRREREEGAATEATEAAEAADAEGAEGQTSGTMAAMPATGQA
LAEAGEAAGVTPVPVAAVAAAEAETAGVAPTAAMPTQAVPAEPAPAPVIAAELAPGSSAA
TQVSPAEAVAPTAAAPQAPATAAADAVPAQAATAVTADAAAEATAEATADVPTELAREAA
PAPAAEAVQQAPAEAVAKPAPEAVNTPAAQQPQAAPAAAVAPLSADALEPMLNAAGLQWV
HTDSAKYRAAQEAAARIVPAPRVPRERKPLPPLPQGPMVLVETGGREVTMDAQQSAAQQ
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggaattgcgcgtcgccatcgtcgac
ggtcagaagctgatcgacatcgatatcgagaccgccgggcgcgagcagcgcaagggcaat
atctacaagggcgtgatcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagagcgtcacggcttcctgccgttcaaggaagtggcccgcgcctacttcaaggaa
ggcgtcgacgtgcgcaacgcgcgcatccaggacgcgctgcacgagggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgtggcggcggcgtgtcgcgc
cgcatcgaaggcgaagaccgccaggagttgcgcgagacgatggcgcagctgaccgtgccc
gacggcatgagcatcatcgcccgcaccgcgggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgcgctcgacaac
aaggcgccgctgctgatctatctcgaatcgagcctggtgatccgcgcgatccgcgattac
ttccagccggacatcggcgagatcctgatcgacaccgacgacatctacgagcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaaccgcgtgaagaaatatcgggacgac
gtgcccctcttctcgcgtttccagatcgaacaccagatcgaatcggcgtattcccgcatg
gtgatgctgccctccggcggcgccatcgtgatcgaccacaccgaggcgctggtctcggtc
gacgtcaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggcgctgcgcacc
aacctggaggcggccgacgagatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggagtcgaacaaggcgcagaaggacgtcgagacgcgg
ctgaaggacgcgctgcgccatgaccgcgcgcgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgtcagcgcctgcgtccgtcgctgtccgagggctcgcatatc
acctgcccgcgctgcaacggcaccggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgcgatccactgccag
gtgccggtcgaggtcgccgccttcctgctcaacgagaagcgccaggacatcaacctgatc
gagctgcgcttcaaggtcaacgtgctgctgatcccgaacaagcatctggaaacgccgcac
tacaagctcgagcgcctgcgccacgacgatccgcgcctggaagaaagcaccgccagctac
cggatggccgaggccgccgccaaggaactggaggcggacaccagctacagcagccgcaag
aaggaagacgccaagccgcgccaggaagccgcggtcaagggcatcacccccgagcagccg
gcgccggtttcggtgccccgccccgagcgcgctccgcgccaggaagccccggcggccaag
ccggccgctccggccgcggcgacgcagccgatcggcagcggcggcttcatcgcctggctc
aagggcctgttcggcgcccgccctgcaccggctccggtgcagccggccaagcccgccgcg
gcggaagcccgtaccggcggcaatggcgaaggcggccggcgcgagcgcggccagcgtggc
gaacgtggccaacgcagtgaacgcggcgagcgtggcgatcgcaccgagcgcgcggaacgt
ggcgaccgcgccgaacgcggcgagcgccaggccggccgtggccagcgtgccgaacgcggc
gagcgtgccgaacgcggygagcgagtggaacgcggcgagcgtggcgatcgcgccgagcgt
cagccgcgccagccgcggcaaggcgaggcgcagccggcgcaggccgaagcccgccagccg
gacgccgtgcaaggcgaacgcggtgaacggaccgagcgcagcgagaaccgccgcgaacgc
aaccaggaacgccgcgagcgccagcgcgaacggcagcgtgagcgcagcgaggcgcgcgcc
gccgatgccgagctgaccgacgtggaagcgggcgtgccgacccagccggtgccggtcgct
gcactgaccgacgaggctggcgctgtccgcgccgaactgccggaaaccgcagacaccgcc
gagaacggcgaaggcgaagagcgtcgccgccgcaatcgccgcggccgcaaccgctatcgc
cgcgagcgcgaggaaggcgccgccacggaagccaccgaagccgccgaggctgcggacgcc
gaaggcgccgagggccagaccagcggcacgatggccgccatgccggccaccggccaggcg
ctggccgaagccggcgaggctgccggcgtgacgccggtgccggtcgccgcggtcgcggcc
gcggaagcggaaaccgcgggcgtcgcaccgaccgccgcgatgccgacccaggccgtgccg
gccgagccggcccccgctccggtgatcgccgccgaactggcgccgggcagctcggccgcg
acccaggtgtcgccggccgaagccgtcgccccgaccgccgccgcaccgcaagcgcctgcc
acggcagccgccgacgcagtgcccgcgcaagcggccaccgcggtgacggccgacgctgcg
gccgaagccaccgccgaagcaacggccgacgtgccgaccgagctcgcccgggaagccgcg
ccggcaccggccgccgaagccgtgcagcaagccccggcggaagcggtcgccaagcccgcc
cccgaggcggtcaacaccccggcagcacagcagccacaggctgcccctgccgccgctgtg
gcgccgctgtcggccgatgcgctcgagccgatgctgaacgcagccggcctgcagtgggtg
cacaccgacagcgccaagtaccgtgccgcgcaggaagccgccgcgcgcatcgtgccggcg
ccgcgtgtgccgcgcgagcgcaagccgctgccgccgctgccgcagggcccgatggtgctg
gtcgagaccggcggccgcgaggtcacgatggacgcgcagcagtcggccgcgcagcagtaa
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