Cupriavidus sp. ISTL7: IC580_10165
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Entry
IC580_10165 CDS
T10433
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cupr Cupriavidus sp. ISTL7
Pathway
cupr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cupr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC580_10165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cupr03019
]
IC580_10165
Enzymes [BR:
cupr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IC580_10165
Messenger RNA biogenesis [BR:
cupr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IC580_10165
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QQE06177
LinkDB
All DBs
Position
1:complement(2360719..2362224)
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AA seq
501 aa
AA seq
DB search
MTTTTNTNTTAVPTPTDITFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMG
AAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYARH
TDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRM
LDMGFLPDLQRIINLLPAKRQTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANENVR
QTVYQVQDGQKQEAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHG
DKTQTERMQTLEGFKQGTIDALVATDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTG
RAGATGDALSIFVPGDERLLADIEKMLKRQIPRAQLEGFDPSAARFRAADDDRRRGRSNE
PRRPRADSEDRPRKADHGNARNAFRASDDPFFSRPYEPSPSASSASSTSSEATLDPRQVG
LARARPKRPVAALLGGVPRKS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccacgaacacgaacaccactgccgtaccgactcccaccgacatcaccttc
gacagcttcgggctggacccgcgcgtgctgcgcgcgctgtccgagcagggctataccaag
ccgaccccgatccaggcgcaggcaatcccggtggtgctgctgggcaaggacgtgatgggc
gcagcgcagaccggcaccggcaagaccgcgggcttcgcgctgccgatcatccagcgcctg
ctgccgctggccaacgcgagcgcctcgccggcgcggcacccggtgcgcgcgctgatgctg
acgccgacgcgcgaactggccgatcaggtctacgacaacgtggcccgctatgcgcgccac
accgacctgcgcagcaccgtggtgttcggcggcgtcgacatgaatccgcagaccgacgcg
ctgcggcgcggcgtcgagatcctggtcgcgaccccgggccgcctgctcgaccacgtgcag
cagaagtcggtcaacctgtcgcaggtgcagatgctggtgctcgacgaggccgaccgcatg
ctggacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggccaagcgc
cagacgctgctgttctcggcgaccttctcgcccgagatcaagaagctggcggccagctac
ctgcaccagccggtgacgatcgaagtggcgcgcagcaactcggccaacgagaacgtgcgc
cagaccgtgtaccaggtccaggacggccagaagcaggaggccgtggtgcatctgctgaag
cagcgtgccgaccagggcctgtcgcgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcggctcgcccgccatctggagcgcgagggcatcaacgccgccgcgatccacggc
gacaagacccagaccgaacggatgcagacgctggaaggcttcaagcagggcaccatcgac
gcgctggtggccaccgacgtcgccgcgcgcggcctggacatcgccgacatgccctgcgtg
atcaacttcgatctgccgttcaatgccgaggactacgtgcaccggatcggccgtaccggc
cgcgccggcgccaccggcgatgcgctgtcgatcttcgtgccgggcgacgagcggctgctg
gccgatatcgagaagatgctgaagcggcagattccgcgcgcgcagctcgaaggcttcgat
ccgtcggcagcgcgcttccgtgccgccgacgacgaccgccgccgcggccgctcgaacgag
ccgcgccgcccgcgcgccgacagcgaggaccgtccgcgcaaggccgaccacggcaatgcg
cgcaatgccttccgggcctcggacgatccgttcttctcgcggccctatgaacccagcccg
agcgcgtcgtcggcgtcgtcgacttccagcgaggcgacgctcgatccgcgtcaggtcggt
ctggcgcgcgcgcggccgaagcgtccggtcgccgcgctgctcggcggcgtaccgcgcaag
tcctga
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