Cupriavidus sp. ISTL7: IC580_23145
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Entry
IC580_23145 CDS
T10433
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cupr Cupriavidus sp. ISTL7
Pathway
cupr03030
DNA replication
cupr03430
Mismatch repair
cupr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cupr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IC580_23145
03430 Mismatch repair
IC580_23145
03440 Homologous recombination
IC580_23145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cupr03032
]
IC580_23145
03400 DNA repair and recombination proteins [BR:
cupr03400
]
IC580_23145
Enzymes [BR:
cupr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IC580_23145
DNA replication proteins [BR:
cupr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IC580_23145
DNA repair and recombination proteins [BR:
cupr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IC580_23145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QQE08958
LinkDB
All DBs
Position
2:1909570..1911174
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AA seq
534 aa
AA seq
DB search
MPDLPSHHDQPTYLAERLPADAPRRLDAATLATALARPIVFVDLETTGTDAQRDRITEIG
VVEVGPDGVTEWDTLLDPGCAIPPFIQRMTGITEEMVRGQPTFETLAESLAERLHGKLFV
AHNARFDYGFLKQSFSRAGITFRADVLCTVRLSRALFPSVERHGLDALIARFGLQPKGRH
RALADAELLWQFWQQVHGLYSVELVESAIASLVKRASLPAGLEETALDDVPQAPGVYLFH
GDNDTPLYVGKSVNLRQRIGAHFSGDYRYGKDLRLSRAVRRVEWRETGGEIGALLQEALL
VKQLEPVHNTLLRRKGPLFAWELPDGLMAPRLRSDRDTDFSRHRGLFAVSASRAGAYARL
RELAEQHGLCQATLTLEPRSRMGTPCFARQLHRCAGACVGAEPLRAHRERLADALRPLAV
APWPFTGPIAWREQDHARAQWHVVDNWCYLGSVASLDDAQTLLGEPARFDLDSYQILAPH
RGRLLAEAVVLPRPSTFELRPCEPIVAARRDSAAGPARPRRIPAAQTPLPLFEF
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgcccagccatcacgatcagcctacttatctagcagagcgcctgcccgca
gacgccccgcgccggctcgacgccgccaccctggcgaccgcactggccaggcccatcgtc
ttcgtcgatctggagaccaccggcaccgacgcgcagcgcgaccgcattaccgagatcggc
gtggtcgaggtcggtccggacggcgtgaccgaatgggacacgctgctggaccctggctgc
gcgatcccgcccttcatccagcgcatgaccggcatcaccgaagagatggtgcgcgggcag
ccgaccttcgagacattggccgagagcctggccgagcggctgcacggcaagctgttcgtc
gcccacaacgcccgcttcgactacggcttcctgaagcaatcgttcagccgcgccggcatt
accttccgggcggacgtgctctgtaccgtgcggctgtcgcgcgcgctgttcccgtcggtg
gagcgccacgggctcgacgcgctgatcgcccgctttggcttgcagccgaaaggccggcac
cgcgcgctcgccgacgccgagttgctgtggcagttctggcagcaggtgcacgggctctat
tcggtcgagctggtcgagtcggcgatcgcctcgctggtcaagcgcgccagcctgccggcg
ggtctcgaggaaaccgcgctcgacgacgtcccgcaggcgcccggcgtctatctgtttcac
ggcgacaacgacacgccgctctatgtcggcaagagcgtcaatctgcgccagcggatcggc
gcgcatttctccggcgactatcgctacggcaaggacctgcgcctgtcgcgcgccgtgcgg
cgggtcgagtggcgcgagaccggcggcgagatcggtgcgctgctgcaggaggcactgctg
gtcaagcagctggagccggtgcacaacacgctgctgcggcgcaaggggccgctgttcgcg
tgggaactgccggacggcctgatggcgccgcgtctgcgttcggaccgcgacaccgatttc
agtcgccatcgcggcctgttcgctgtcagcgccagccgcgccggcgcctatgcccgcctg
cgcgagctcgccgagcagcacgggctctgccaggccacgctgacgctggagccgcgcagc
cggatgggaaccccgtgtttcgcgcgccagctccatcgatgcgctggggcctgcgtcggc
gcggagccgctgcgcgcccatcgggagcgcctggccgacgcgctccgcccgctggcggtc
gcgccgtggcccttcaccggcccgattgcctggcgcgagcaggaccatgcgcgcgcccaa
tggcatgtcgtcgataactggtgctatctgggttcggtggcctcgctggacgatgcgcag
acgctgctgggcgagccggcccgcttcgatctggacagctatcagatcctggcgccgcac
cgcgggcggctgcttgcggaggccgtcgtgctgcctcgtccgtcgaccttcgagctgcgc
ccgtgcgagccgatcgtcgccgcgcgccgagacagcgccgctggaccggcacggcccagg
cgcatacccgccgcgcagacgccgctgccgctattcgagttctga
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