Corynebacterium ulcerans 210931: Cul210931_1293
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Entry
Cul210931_1293 CDS
T03414
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cuq
Corynebacterium ulcerans 210931
Brite
KEGG Orthology (KO) [BR:
cuq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuq03019
]
Cul210931_1293 (hrpA)
Enzymes [BR:
cuq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Cul210931_1293 (hrpA)
Messenger RNA biogenesis [BR:
cuq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Cul210931_1293 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_11
nSTAND3
HA2_N
AAA_30
ResIII
NACHT
PhoH
SLFN-g3_helicase
TsaE
AAA_16
ABC_tran
AAA_23
AAA_25
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AIU30629
LinkDB
All DBs
Position
1420257..1424255
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTAKHQPRDNNNVDTNAIPTTPKKQRHSTASSRPDAELRSAKKSLRTKLNQVSIAEERV
FLRRIHKASSMGAIKAITNDIGQAQATLLQRTANIPAVTFPENLPVSSQRDAIAEAITNN
QVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAERIAEELGQKIGDS
VGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFILGYL
KQLLPRRPDLKVIITSATIDPERFAQHFSDAHGNPAPIIEVSGRTYPVEILYRPLELSEG
EKLIDVDPIDGLIQAIQELMGYGPGDILCFFAGEADIREAMDAIEAKRWKNVEVTPLFGR
LSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHFVVDTGTARISRYSTRTKVQRLPIE
PISQASANQRSGRCGRVTDGIAIRLYSQQDFESRPEFTDPEILRTNLASVILRMASLKLG
DIENFPFIQAPDTRAIRDGFLLLKELGALTESDQEDSLRLTTVGRSLAKIPLDPRLARML
IAAEEYGCLREAYIVVAALSIQDIRERPLEKQSQADQLHARFKDTSSDFLSYLKLWEYIA
EKRAELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQIGWTNPEDIGGIFNPDNLH
KALLSGLLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLSKRPPQFLMAAELVETSRLWARN
VAEIDPAWVEHIGKNLLKHHYSEPYWSTKRVAAMVHQRSTLYGVPVIADRSVGYASIDLR
AARDMFIREALVNGNWTTHHAFYRRNAEKLLSAAQIEEKIRRRDVVVDEDTLFSFYDSRI
PKHIATGRSFDRWWKTTAHETPHLLDFDLEELRRDGAANVDEKDFPDVWRRGSLEFGLTY
HFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVTDLIRSLPKHLRKTVVPAPD
FAHKITAMLAYRDGSLYHRIAECLAELGRPGISAEDFNPQALPKHLTITFAAVDKRGRII
DRDKSLESLKSRRSEQIRASVSRVSHAVEQSSAKEWTTQSLGAIAQEVTTKVDGQIVTTY
PALVVTPEGVSVKAMATKREADASMFTATLTLLLKAVPVNTQKMLNGLPLQQRVAIENYP
HGGATGFVNDARVAVVRDLIIAHGGAVRSPEEFSKLQAVIKPLVPSKVRAIVVELAPGIN
SYLRIKSEISNWAGPAIDDINNQLNFLLPPHALSQHGAQRLKHLSRYVQAITLRLEDMGR
MPDRDADRQLLINRLERDLAQKVQKSGHGKSTRQIRDIQWMIQELRVSLFAQRLGTAQSV
SERKIAKAIEQL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcgaaacatcagccccgcgataataacaacgttgataccaacgcaatccct
accactcctaagaagcaacgacactcgacggcatcttcccgaccggatgccgagttacgt
tctgcaaagaaatcgcttcgcacaaagcttaatcaggtcagtattgccgaggaacgagtc
tttcttcgtcgtattcacaaggcctcgtccatgggcgccattaaggctatcaccaatgat
atcggtcaagcccaggcaacattattacaacgaacagcaaacattcctgctgttacgttc
cccgagaatcttccagtctctagccaacgtgacgctatcgcagaagctatcaccaacaat
caggttgtcattattgcgggagaaacaggatcgggaaaaaccacgcaaattcctaagatc
tgtttagagctaggccgcggagtacgtggtttgatcggccatacacaaccgcggcggctt
gctgcacgcacggttgcagaacgcatcgcggaagaactcggtcaaaaaatcggtgattcg
gtgggatatgccatccgttttgatgatcgcgtttctgcgtccacgtctatcaagttgatg
accgacggcattctgctcgcagagatgcagcgagatcgcttcctcaacgcttatgacaca
ataatcatcgatgaagcgcacgagcgcagtctcaatatcgattttattctcggctacctc
aagcagctccttccacggcgtcctgatcttaaagtcatcattacctctgcgacaatcgat
ccagaacgatttgcacagcacttctctgacgcccacggtaatcctgcgccaatcattgaa
gtctccgggcgcacataccccgttgagattctttatcgtccgcttgaactctccgagggc
gaaaaacttatagacgtcgatcccatcgatggactcatccaagccatccaggagcttatg
ggatatggccccggagatatcctgtgcttctttgcaggagaagcagatattcgcgaggcc
atggatgctatcgaagccaaacgctggaaaaacgttgaggtcactcccctcttcggccgc
ctctccaaccaagagcagcatcgggttttctctccccattcaggacgcagaattgtttta
gcaaccaatatcgcggaaacctcacttactgttcccggtattcattttgtggtggacacc
ggaaccgcacgcatttccaggtattccactcggactaaagtccagcgccttcctatcgaa
ccaatttcgcaggctagcgccaatcaaaggtcaggacgctgtggtcgtgtcacggatggc
atagcgatccgcttgtactcccagcaagattttgagtctcgaccagaatttactgaccca
gaaatcctgcgaacaaatttggccagtgttatccttcggatggcttcgctcaaattaggc
gatattgaaaactttccttttattcaagcccctgacacccgggccatccgcgacggtttc
ttgcttctcaaagagctcggagctctcaccgagtcggatcaagaagattctcttcgtctc
accacagtcggccgtagcctagccaagattcctctggatccccgtcttgcgcgaatgctg
attgctgcagaagaatacggttgtctcagagaggcctacatagtggtagccgctttgagc
attcaagatatccgtgaacgtccgttggaaaagcaaagccaggcggaccaactccacgca
cgttttaaagacacaagcagcgattttcttagctatcttaagctctgggaatacatcgca
gaaaagcgtgcagagctgtctggcaatgctttccgacgcaccatgcaatctgaatttttg
cactatatgcgcatcagggagtggtcagatctcattcgtcagttgcgtagcatcggggaa
cagattggctggaccaacccagaagacatcggagggattttcaatcctgacaatttacac
aaagctctgctctctgggttgttatcccatatcggtttgcgcgacggtgattccaaagag
ttcataggcagcagaaactccagattcttagtattcccaggttcttctttatccaagcgt
ccaccgcaattcctgatggcagcggaactggtagaaacttcccgattgtgggcacgaaat
gtagcggaaatcgatcccgcttgggtcgaacatataggtaaaaacctgctcaaacaccat
tactctgagccgtattggtccacaaaacgcgtggccgccatggtgcaccaaaggtcgacg
ttatatggtgtgccagttattgctgatagatcagtcgggtatgcctctattgatcttcgc
gctgcccgcgatatgttcattcgggaagccctagtcaacggcaattggactacgcaccat
gctttttatcgtcgtaacgcagaaaaactactttcagctgcacaaattgaagaaaaaatc
cgacgccgtgatgttgtagtcgatgaagataccctctttagcttttacgattccagaatc
cccaagcacatcgccaccggacgttcctttgaccgctggtggaaaactactgcgcacgaa
acgccacaccttctggactttgatctggaggaactgcgccgagatggcgcagcgaacgtc
gatgagaaagatttccccgatgtatggcgccgaggatctttggaattcggtttaacttat
cactttgatcccagtgccgaagacgacggtgtcaccgttcttgtccccgtgcccttgctg
ggaggcctcgatgccgatggctttgaatggcttgttccagggttgttggaagatctggtc
accgacctgatccgttctttacctaaacacttgcgtaaaaccgttgttcctgcacccgat
tttgcccataaaatcacagcgatgctggcctatcgtgacggttccctttaccatcgcatc
gccgaatgcttagcagagttgggtcgtcctggaatatctgcggaagacttcaacccacaa
gcgcttcccaaacacctcacaataacattcgcggctgtggataaacgcgggcgtatcatc
gatcgggataaatcgctcgagtcgctcaaatcccgacgttccgagcagatccgagcatcg
gtttcgcgggtgtctcatgcagttgagcagtcctctgctaaggaatggactacgcagtct
ctaggtgctatcgcacaagaagtcaccacaaaagtcgatggacaaatagtgacaacgtac
ccagcacttgtcgttacgcccgaaggcgtttctgttaaggctatggcgactaaacgcgag
gctgatgcctccatgtttacagcgacgctaacgttattactcaaagccgtacccgtgaac
acccaaaagatgctcaatggactgccgctgcaacaacgagttgctatagaaaattatccg
cacggtggcgccacaggctttgtcaacgatgcgcgggttgcggtcgtacgagacttgatc
atcgctcacggtggcgcggtgaggtcaccagaagagttttccaagctacaagcggttatc
aaaccattagttcccagcaaggtacgtgcaatagtcgtcgaattagctcccggtattaac
tcttatcttcgcatcaaatcagagatcagcaattgggcaggtccagctatcgacgatatt
aacaatcaactcaattttctacttccgccgcatgccctatcccagcatggagcacaacgc
ctcaagcacctttcaagatacgtacaagcaatcacgcttcggctcgaagacatgggtcgg
atgcctgatcgagatgcagacagacagttactgattaatcgattagaacgggacctagcg
cagaaagttcaaaaatctgggcacggaaaatctactcgacagatacgagatatccaatgg
atgattcaagaattgcgtgtcagcctttttgcccaaaggctgggaactgcacaatcagtc
tctgaaaggaagattgcaaaagcaatcgagcagctctaa
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integrated database retrieval system
