Corynebacterium urealyticum DSM 7109: cu0584
Help
Entry
cu0584 CDS
T00685
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cur
Corynebacterium urealyticum DSM 7109
Pathway
cur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
cu0584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cur03400
]
cu0584
Enzymes [BR:
cur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cu0584
DNA repair and recombination proteins [BR:
cur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
cu0584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
Arg_repressor_C
UB2H
RecG_dom3_C
DUF7692
Motif
Other DBs
NCBI-ProteinID:
CAQ04544
UniProt:
B1VFK5
LinkDB
All DBs
Position
699050..702799
Genome browser
AA seq
1249 aa
AA seq
DB search
MSTTVRPSASQNTSAPGNKGHAAPALSGVLRAAARDSKLKGLVTHVGAAQLAIQGPDAVW
PFAVGTIAQHAPVLVITATARQAEDLTEQLKAMLGDEVELMPAWETLPHERISPNVETVS
QRMKVLRRLHRQTAGELGESDTHIRVVVAPVRTLVQPIQDSLGAVTPVHFAVDQEVDFEQ
IQHELVERGYSAVDVVAKRGHFAVRGGILDVFPATGELPVRVEFWGDEVSDIRPFSVGDQ
RTIPGVELDEVTVYPARELLITDSVATRAGQLAKEHASHAELADVYHKISEKIVVPGMEA
LIPSLHDGELKLLPEFLPEGTHTIVLAPAAVERRAADLKETGEQFLEAGWEAAAMGANAP
ADGVAYVSVAAARHAQTALDRPWWTLSPLGMLDSDEGFDGDALLLDYDAAPQPRGEMEAI
EHMMADIRTRVEAGGRVAFAAPTSTVAARMLRRFHEAGIAAEAVGVDLRGQRGIGRQAAS
KATPDQEPAPKKVSIYHAVAHEGLVFPMAGGEHPSLLFLTETDVTGNRVEAAATGKRKPA
KRRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGADASRREYLVLEYAPSKRGGPG
DQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARKAVREIAGELVQLYAQRQAA
PGYAFAPDSPWQREMEEAFPFTETEDQFNAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVA
VRAAFKAVQSGKQVAVLVPTTLLAQQHMKTFRDRMQDFPTRIAELSRFTTPAQSKEILKG
LAEGTIDIVVGTHRLLQTGVTWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATP
IPRTLEMSMAGIREMSTILTPPQDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYIHNR
VKSIEKAAEHIRSLVPEARVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDIS
NANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNE
LGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGR
EEEKKEIRIDLPVDAHIPVTYVASERLRLEAYRKLAEAQDEDQIEEVLTEFRDRYGEPPA
QVTNLAVLSRLRLVCRDLGVSEVVATGSRISFSPIDLQDSGQVRLKRLFPGATYRATTKV
VVIPAPKEGAGMRAVALRDVPLAQWCANALTQLAGIPERDISGGSAPTR
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccacggtccgcccatcggcaagccaaaatacgtccgcaccagggaataagggg
cacgcggctcccgcgctgtcgggtgtgctgcgggccgccgcgcgcgactcgaagctcaag
ggcctggtcacccatgtcggtgccgcgcagttggcgatccagggccccgacgcggtgtgg
cccttcgccgtcggcaccattgcccagcacgctccggtgttggtgatcacggcgaccgcc
cggcaggccgaggatctcaccgagcagctcaaggccatgctgggcgacgaggtggagctc
atgcccgcctgggagaccctgccgcacgagcggatctccccgaacgtggagaccgtctcc
cagcggatgaaggtgctccgccgcctacaccggcagaccgccggcgagctgggggagtcc
gatacccatattcgggtggttgtcgcgccagtgcgcacgttggtgcagcccatccaggac
agcctcggtgccgtaactcccgtccacttcgccgtcgatcaggaggtggatttcgaacag
atccagcacgagctggtggagcgcggttactccgcggtggacgtggtcgccaagcgcggg
cacttcgcggtgcgcggtggcattctcgacgtcttcccggccacgggagagctgcccgtg
cgcgtggaattctggggcgacgaggtctccgacatccgccccttcagcgtcggcgatcag
cgcaccatccccggggtggagctcgacgaggtcaccgtctacccagcccgcgagctgctc
atcaccgactccgtggccacccgcgccgggcagctggctaaagaacacgccagccatgct
gagctggcggatgtgtaccacaagatcagcgagaagatcgtcgtgcccggcatggaggca
ctgatcccgagcctccacgacggtgagctgaagctcctgccggaattcctgccggagggt
acgcacaccatcgtgcttgccccggccgctgtcgagcgccgcgccgcagacctgaaggag
accggcgagcaattcctcgaggccggctgggaggccgcggccatgggggcgaacgctccc
gctgacggcgtggcctacgtgtccgtcgccgctgcccgacatgcccagacggcattggac
cggccgtggtggacactgtccccgctcggcatgctggactccgacgagggcttcgacggc
gacgccctccttctcgactacgatgccgcgccccagccccgcggcgagatggaggccatc
gagcacatgatggccgatatccgcacccgcgtggaggccggcggtcgggttgccttcgcc
gccccaacatccaccgtcgctgcccgcatgctgcgccgcttccacgaggcaggcatcgcc
gcagaggccgtgggggtggacctgcgcggccagcgcggcatcggccgtcaggccgcatcc
aaggcgaccccggaccaggagccggcgccgaagaaggtcagcatctaccacgcggtcgcc
cacgagggcctcgtcttcccgatggcggggggagagcaccccagcctgctgttcctgacc
gaaacggacgtcaccggcaaccgcgtggaggcggcggcgaccggtaagcgcaagccagcc
aagcgccgcaaccgcgtggatccgctggccctggagcccggcgacctggtggtccacgat
tctcacggcatcggcaagtttgtgaagatgaccgagcgcaccgtcggcaagggtgcggac
gcctcccgtcgcgaatacctcgtcctcgaatacgcacccagcaagcggggtggaccaggc
gaccagctttacgtccccatggaccagctcgacctgctgtcccgctacgtcggtggggag
aagccggccctatccaagatgggtggtgcggactggaagaacaccaagcgcaaggcccgc
aaggccgtccgggaaatcgccggggagctcgtgcagctctacgcccagcgccaagccgcg
ccgggctacgccttcgctccggatagcccgtggcagcgggagatggaggaagctttcccc
ttcaccgagaccgaggaccagttcaacgccatcgaggccgtgaagtccgacatggaaaag
ccggtgccgatggaccgcgtcatcgtgggtgatgtgggctacggcaagacggaggtcgcg
gtgcgcgccgccttcaaggccgtccaatccggcaagcaggtcgccgttctcgtcccaacg
acgctgctcgcgcaacagcacatgaagaccttccgggaccggatgcaggacttcccgacg
cgcatcgcggagctgagccgtttcactacccctgcgcagtccaaggagatcctcaagggg
ctggccgagggcaccatcgacatcgtcgtgggcacccaccgcctgctgcagaccggcgtg
acctggaaaaacctggggctcatcatcgtcgacgaggagcagcgctttggcgtggagcac
aaggagcacatcaagtccttgcgcacccacgtggacgtcctgaccatgtccgctactccg
atcccgcgcacgctggagatgtccatggccggcatccgcgaaatgtcgaccatccttacc
ccgccgcaggaccgtcatccggtgctgacctacgtcggtgcccaggaggacaagcacgtc
gctgccgcgatccgccgcgagctgctgcgtgacggtcaggtgttctacatccacaaccgg
gtgaaatccatcgagaaggcggcggagcacatccgcagccttgtgcccgaagcccgggtc
gtggtcgcccacgggcagatgagcgaggaacagctggaaaccaccgtggagggcttctgg
aaccgggagttcgacatcctggtgtgcaccaccatcgtggagaccggcttggacatctcg
aatgccaacaccctgatcgtggagaacgcccaccacatgggcctatcccagttgcaccag
ctgcgcgggcgcgtgggtcggtcccgggagcgggcctatgcctacttcctctatccgaag
ggcgaggttctcaccgagacctcctacgaccgactgtccaccatcgcgcagaacaacgag
ctcggcgcgggtatggccgtcgcgatgaaggacctcgagatgcgtggcgccggcaacgtg
ttgggcgccgagcagtcggggcacattgcgggggtgggcttcgacctctacgtccggctt
gtcggtgaggcagtggaggccttccgtgcgatggcggacggcaagccggtggacgggcgc
gaggaggagaagaaggagattcgtattgacctgccggtggatgctcacatcccggtgacc
tacgtggcctccgagcgactccgactggaggcctaccgcaagcttgccgaagcgcaggat
gaggaccagattgaggaggtgctcaccgagttccgggaccgctacggcgagccgccggcc
caggtgactaacctcgcggtgctgtcccgactgcggttggtttgccgtgacctgggggtc
tcggaggtcgtggcgacgggctctcgcatcagcttcagccccatcgatttgcaggactcc
ggccaggtgcgattgaagcgtctattcccgggggcgacgtaccgggcgaccactaaggtc
gtggttattccggcgccgaaggagggtgcggggatgcgggcggtcgcgctgcgggatgtg
ccgttggcccagtggtgtgcgaatgctctcacccagctggctggcatcccggaacgggac
atcagcggaggtagcgccccgacgcgttag
DBGET
integrated database retrieval system
