Curtobacterium sp. C1: LQK89_01335
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Entry
LQK89_01335 CDS
T10648
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
curz Curtobacterium sp. C1
Pathway
curz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
curz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LQK89_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
curz03400
]
LQK89_01335
Enzymes [BR:
curz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LQK89_01335
DNA repair and recombination proteins [BR:
curz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LQK89_01335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UFU14368
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Position
258844..261348
Genome browser
AA seq
834 aa
AA seq
DB search
MSPVSRRTTVQVGDRRIALSNTDKVLYPESGTTKGQVIAYYERVAPWMIPHVKDRPVTRK
RWANGVDGKVFFEKNLPDSAPDWIRHHTIAHKEHDTEYPVVDDLPTLVWMAQQAALELHV
PQWRFGPRGGQQHPDRLVLDLDPGEGVGLPECIEVAVAARELLQGMGLDPHPVTSGSKGI
HLYAALDGRSAAQHVSEVAHELARALEQDLPDLVLSSMSRAERAGKVFVDWSQNNGNKTT
IAPYSLRGRDRPTVAAPRTWDELTSRGLAQLTLDEVLDRLEERGDRLHPVASASLSVGRP
DSGHWDGDRTQRANDAEQPGRDRLAAYRAKRDASKTPEPVPEGAPTVRKDGTPTFVVQEH
HATRDHYDFRLEHDGVLVSWALPKGEPTDPGKNHLAVQTEDHPLEYGGFEGTIPHGEYGA
GTVTIWDDGTYELEKWREGEEVIVTLHGRTNGNRRLALLHTRGRGRGKDGDEKNWLIHRT
KEQPSRTPDEGRAAPASGSGSAAVSDGAAANTPTERRPMLASPVSGTPSFDPDVWAFEMK
WDGVRALATVRDGAVTLRSRNGNDLTAQYPELQELADRAGVDGVFDGEVVALDEAGRPSF
QRLQDRMGLTRKREVDAAQATTPVRFLLFDVLEADGHDLVRLGYDARRDALATVVDPGGA
IEVPPAFDGDFDAAVAESARLRLEGVVAKKRRSRYTEGRRSESWVKVKHLAAQEVVVGGW
KPGAGRRAGGIGSLLLGVPGPDGLEYVGKVGTGFRDRDLDEIADVLRSRARKTSPFVDVP
RPDARDAHWVRADRVGEVVFAEWTADGRLRQPSWRGWRPDKDPDDVVREAGPET
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccgtctcccggcgcacgacggtccaggtcggggaccgccgcatcgcactgtcc
aacaccgacaaggtcctgtacccggagagcgggacgaccaaggggcaggtgatcgcctac
tacgagcgggtcgcgccgtggatgatcccgcacgtcaaggaccgtccggtgacacggaag
cgctgggcgaacggcgtcgacggcaaggtgttcttcgagaagaacctgccggactccgcg
cccgactggatccggcaccacaccatcgcgcacaaggagcacgacaccgagtacccggtc
gtcgacgatctgccgacgctcgtgtggatggcgcagcaggccgcgctcgagctgcacgtg
ccgcagtggcggttcggtccgcgcggtggccagcagcacccggaccggctcgtgctcgac
ctggacccgggtgagggggtcggcctgcccgagtgcatcgaggtcgcggtcgccgcccgt
gagctcctgcagggcatgggcctcgacccccacccggtgacgtccggctcgaagggcatc
cacctgtacgcggcgctggacggacggtccgccgcgcagcacgtctccgaggtcgcgcac
gagctcgcgagggcgctcgagcaggacctgcccgacctggtgctgtcgtcgatgagccgc
gcggagcgcgccggcaaggtcttcgtcgactggtcgcagaacaacggcaacaagacgacg
atcgcgccgtactcgctgcgcggccgggaccggccgacggtcgccgcaccgcgtacctgg
gacgagctcacgtcgcgcggactcgcccagctcaccctggacgaggtgctcgaccgcctg
gaggagcgtggggaccgcctgcacccggtcgcgtccgcctcgctgtcggtcgggaggccc
gactcgggtcactgggacggcgaccggacccagcgtgcgaacgacgcggagcagcctggt
cgcgaccgcctcgccgcgtaccgcgcgaaacgggacgcctcgaagacaccggagccggtc
ccggagggcgcaccgacggtccggaaggacggcacaccgacgttcgtggtccaggagcac
cacgcgacccgggaccactacgacttccggctcgagcacgacggggtgctcgtcagctgg
gcgctcccgaagggcgagccgaccgacccggggaagaaccacctcgcggtgcagaccgag
gaccacccgctcgagtacggcggcttcgagggcacgatcccgcacggcgagtacggcgcc
ggcacggtcacgatctgggacgacggcacctacgaactcgagaagtggcgggagggcgag
gaggtcatcgtcaccctgcacggacggacgaacggcaaccggcgactggcgctcctgcac
acccgcggccgcggtcgcgggaaggacggcgacgagaagaactggttgatccaccggacg
aaggagcagccgtcgcggacgcccgacgagggccgggccgcaccggcctcgggctcgggc
tccgccgcagtgtcggacggggcggcggcgaacacgccgaccgagcggcgcccgatgctc
gcgtcgccggtgtcgggtacgccgtcgttcgaccccgacgtgtgggcgttcgagatgaag
tgggacggcgtccgggcactcgccaccgtgcgggacggcgccgtgacgctccggagccgg
aacggcaacgacctgaccgcgcagtaccccgaactccaggagctcgccgaccgggccggg
gtcgacggggtgttcgacggcgaggtcgtggcgctcgacgaggcgggccgcccgtcgttc
cagcggctgcaggaccggatgggattgacgcggaagcgcgaggtcgacgcggcgcaggcg
accacgcccgtgcgcttcctgctcttcgacgtcctcgaggccgacgggcacgacctcgtc
cggctcggctacgacgcccgccgggacgccctggcgacggtcgtggaccccggcggtgcg
atcgaggtgccgccggcgttcgacggggacttcgacgcggccgtcgcggagtccgcccgg
ctgcggctcgagggggtcgtggccaagaagcggcgctcgcggtacaccgaaggccgccgg
tccgagtcgtgggtgaaggtcaagcacctcgccgcgcaggaggtcgtcgtcggcggctgg
aagcccggggccggtcgtcgcgcgggcgggatcggctcgctgctgctcggggtccccggg
ccggacggactcgagtacgtcggcaaggtgggcaccgggttccgcgaccgcgacctcgac
gagatcgccgacgtgctccgctcccgggcccggaagacctccccgttcgtcgacgtcccc
cgaccggacgcccgggacgcacactgggtccgcgccgaccgggtcggcgaggtcgtgttc
gccgagtggacggcggacgggcggctgcgccagccgtcgtggcgagggtggcggccggac
aaggacccggacgacgtcgtccgcgaggccggacccgaaacgtga
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