Curtobacterium sp. C1: LQK89_13105
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Entry
LQK89_13105 CDS
T10648
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
curz Curtobacterium sp. C1
Brite
Enzymes [BR:
curz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LQK89_13105 (hrpA)
Messenger RNA biogenesis [BR:
curz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LQK89_13105 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UFU13442
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Position
2739108..2742983
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AA seq
1291 aa
AA seq
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MSAAPVITYPPELPVSQRRDDIAAAIRDHQVVIVAGATGSGKTTQLPKICLELGRESIGH
TQPRRIAARTIAERVSEELGGELGDLVGYQVRFTDKVSANTRIKLMTDGILLNEIHFDRD
LKRYDTIIIDEAHERSLTIDFLLGYLKRLLPRRPDLKVVITSATIDPESFSQHFGGAPII
EVSGRTYPVEVRYRPLVADDATDADDDTDARNDDTDPRTDDSGSRGGAGADDRDVLQGIT
DALDELAQEDPGDVLVFLSGENEIRDAQDAIEGRKYPGTEVLPLYGRLSAADQHRVFERR
STPGIRRRVVLATNVAETSLTVPGIKYVVDTGTARISRYSPRAKVQRLPIEAISQASANQ
RSGRAGRTSAGIAIRLYSEPDFDRRPEFTDPEILRTNLAAVILQMISLGFGDIESFPFLQ
PPDSRGVKDGLDLLRELRAVDGDGRITKTGRQLTRLPIDPRLGRMVLEAGRQGVGREVIA
IVSALSIQDPRERPLEKRAHADQLHARFADPTSDFLTLLNLWNHIEDQQEAMSSSAFRRL
CKAEFLNYLRIREWQDLYRQLARAAKQVDVRVGQSRSEDGDAVHRSLLAGLLSQIGLRDK
EKRDYLGSRNTRFVVFPGSVLAKKQPDAVMAAELVETSRLFARTVGRIDPAWVEPLAGDL
LKRTHGEPHWEKKQGAAVAYERVTLFGVPVVQRRRVQYKRVDPEHSRELFIRHALVEGEW
DAQQAFDRDNRKLRRELEQLEERTRRRDILFDDERVYDFYDARIPADVATTRDFEGWWRQ
ARRDQPDLLTMRRSDLLDEDAAEAAQDQQEYPTQWRSGDQRLAIKYRFEPGAQDDGVSVQ
VPLALLPRMREEGFDWQVRGLRKELVTALIKSLPKQIRKNVVPAADWAEKIVAELPDDAP
TEPTESFRATLAKAIQRMTYVTVDESDFDLARVPAHLLPTWAVVDERGRRVESGKDLSAL
QTKLKDRTRQSVASATAKAASRPGGAARVAGASSGVQLERSGMTAWPPQDLPQVLDTKQA
GGVIRAYPSLVEEGDGPKATVGVELLATPGDRAVRMPAGVRRLVMHAVPSPVSYVQSHLT
AQEKLALAASPYPSTAALFDDVLAAVVDAGIRRAHPDGLIFTKAEFEAVRDAVSATVVDT
MFTAVSEVAAVLTAQRAADKALKQANAMALLPALSDMRQQSERLVFPGFVSVAGLDRLRR
IRVYLQGIDARVQKLLQNPGRDAGWMREVSVATDRYTDAGGTFPPSIGAHPELVHARWML
EEFRLSLFAQELGTAETVSLQRITKALAAAR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgcacccgtcatcacgtacccgccggaactgcccgtctcgcagcggcgggac
gacatcgccgccgcgatccgcgaccaccaggtcgtcatcgtcgcgggcgccacgggttcc
ggcaagacgacgcagctgccgaagatctgcctggagctcgggcgcgagtcgatcggtcac
acgcagccccgtcggatcgcggcgcggacgatcgccgagcgcgtgtccgaggaactcggc
ggcgagctcggcgacctggtcggctaccaggtgcgcttcaccgacaaggtgtcggcgaac
acccgcatcaagctgatgaccgacgggatcctgctcaacgagatccacttcgaccgcgac
ctgaagcgctacgacacgatcatcatcgacgaggcgcacgagcgctcgctgacgatcgac
ttcctgctcggctacctcaagcgactgctgccccgacgtcccgacctgaaggtcgtcatc
acgtcggcgacgatcgacccggagtcgttctcgcagcacttcggcggcgcgcccatcatc
gaggtgtccgggcggacgtacccggtcgaggtccgctaccgcccgctcgtggcggacgac
gccaccgacgcggacgacgacaccgacgcgcgaaacgacgacaccgacccgcggaccgac
gacagcggcagccgcggcggtgcgggcgcggacgaccgcgacgtcctgcagggcatcacc
gacgcgctcgacgagctggcgcaggaggacccgggcgacgtcctcgtgttcctgtccggc
gagaacgagatccgcgacgcgcaggacgcgatcgaggggcggaagtacccgggcaccgag
gtcctgcccctgtacggccggctgtccgcagccgaccagcaccgcgtcttcgaacggcgg
agcaccccgggcatccgccgccgcgtggtcctcgcgacgaacgtggcggagacgagcctc
acggtgccgggcatcaagtacgtcgtcgacaccggcaccgcgcgcatctcccggtactcc
ccgcgcgccaaggtgcagcggctcccgatcgaggcgatctcgcaggccagcgcgaaccag
cgctcgggtcgtgccggccggacgagcgccggcatcgcgatccggctgtactccgagccc
gacttcgaccgtcgcccggagttcaccgaccccgagatcctccgcacgaacctcgcagcc
gtgatcctgcagatgatctcgctcggcttcggtgacatcgagtcgttccccttcctgcag
ccgccggactcccgtggtgtgaaggacgggctcgacctgctccgcgagctccgggccgtg
gacggcgacgggcgcatcacgaagaccgggcggcagctgacccggctcccgatcgacccg
cggctcggccggatggtcctcgaggcgggccggcagggcgtcgggcgcgaggtcatcgcg
atcgtcagcgccctgagcatccaggacccccgcgagcgtccgctcgagaagcgcgcgcac
gccgaccagctgcacgcgcggttcgccgacccgacaagcgacttcctcaccctgctcaac
ctctggaaccacatcgaggaccagcaggaagccatgtcgtcgagcgcgttccggcggctc
tgcaaggccgagttcctcaactacctgcgcatccgcgaatggcaggacctgtaccgccag
ctggcccgcgcggcgaagcaggtcgacgtccgcgtcgggcagtcccgcagcgaggacggc
gacgcggtgcaccggtcgttgctcgccgggctcctcagccagatcggcctgcgcgacaag
gagaagcgcgactacctcggctcccgcaacacccgcttcgtggtgttccccggcagtgtc
ctcgcgaagaagcagcccgacgccgtgatggccgccgagctcgtcgagacgagtcgcctg
ttcgcccggaccgtcgggcggatcgaccccgcgtgggtcgagccgctggcgggggacctg
ttgaagcgcacccacggtgaaccgcactgggagaagaagcagggcgccgccgtcgcgtac
gagcgggtgaccctgttcggcgtccccgtggtgcagcggcgtcgcgttcagtacaagcgc
gtcgacccggagcactcgcgcgagctgttcatccggcacgccctggtcgagggcgagtgg
gacgcccagcaggccttcgaccgcgacaaccggaagctccgccgcgagctcgaacagctc
gaggaacgcacccgtcggcgggacatcctgttcgacgacgagcgcgtgtacgacttctac
gacgcccgcatccccgcggacgtcgccacgacgcgcgacttcgaggggtggtggcgccag
gcgcggcgcgaccagccggacctcctcacgatgcgccggtcggacctgctcgacgaggac
gcggccgaggccgcccaggaccagcaggagtacccgacgcagtggcgctcgggcgaccag
cgcctcgcgatcaagtaccgcttcgagcccggcgcgcaggacgacggcgtgagcgtgcag
gtgccgctcgcgctgctcccccggatgcgcgaggaaggcttcgactggcaggtgcgcggc
ctccggaaggagctcgtcacggcgctcatcaagtcgctgccgaagcagatccgcaagaac
gtcgtgcccgcggcggactgggccgagaaaatcgttgcggagctgccggacgacgccccg
acggagccgaccgagtccttccgcgcgacgctcgccaaggcgatccagcggatgacctac
gtcaccgtcgacgagtccgacttcgacctcgcgcgggtcccggcgcacctgctcccgacc
tgggccgtcgtcgacgagcgcggtcggcgggtcgagtccggcaaggacctgtcggccctg
cagaccaagctcaaggaccggacccggcagagcgtcgcgtccgccacggcgaaggccgcg
tcccggcctggaggcgcggcgcgcgtcgccggggcgtcctccggtgtgcagctggagcgg
tccggcatgacggcgtggccgccgcaggacctgccgcaggtgctcgacacgaagcaggcc
ggcggggtgatccgcgcctacccgtccctggtcgaggagggcgacgggccgaaggcgacg
gtcggcgtcgagctgctcgcgaccccgggcgaccgggccgtccggatgccggccggtgtc
cggcgtctggtgatgcacgcggtgccgtcacccgtgtcgtacgtgcagtcgcacctcacc
gcgcaggagaagctcgcgctcgccgcgagcccgtacccctccaccgcggcgctcttcgac
gacgtgctcgccgcggtcgtcgacgcgggcatccgtcgagcgcacccggacggactgatc
ttcacgaaggccgagttcgaggccgtgcgggacgccgtgtccgcgacggtcgtcgacacg
atgttcacggcggtgtccgaggtcgccgcggtcctcaccgcgcagcgcgctgccgacaag
gccctcaagcaggcgaacgccatggcgctcctgccggcgctcagcgacatgcgccagcag
tcggaacgcctggtgttcccgggcttcgtcagcgtcgccggcctcgaccgcctccggcgc
atccgcgtgtacctgcagggcatcgacgcccgcgtgcagaagctcctgcagaaccccggc
cgtgacgccggctggatgcgcgaggtgtccgtcgcgacggaccgctacaccgacgccggc
gggaccttcccgccgtcgatcggcgcgcacccggagctcgtccacgcgcggtggatgctc
gaggagttccggctcagcctgttcgcgcaggagctcgggacggccgagacggtctcgctg
cagcgcatcacgaaggccctggccgccgcccgctga
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