Corynebacterium ramonii FRC0011: CulFRC11_0865
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Entry
CulFRC11_0865 CDS
T03408
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cus
Corynebacterium ramonii FRC0011
Pathway
cus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CulFRC11_0865 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cus03019
]
CulFRC11_0865 (deaD)
03009 Ribosome biogenesis [BR:
cus03009
]
CulFRC11_0865 (deaD)
Enzymes [BR:
cus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CulFRC11_0865 (deaD)
Messenger RNA biogenesis [BR:
cus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CulFRC11_0865 (deaD)
Ribosome biogenesis [BR:
cus03009
]
Prokaryotic type
rRNA helicases
CulFRC11_0865 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
AIU32451
LinkDB
All DBs
Position
919524..921557
Genome browser
AA seq
677 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVDEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKAKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFERDDRRGDRRDRGERRDRGDRGDRGSRF
ERSGDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGLPQS
VFDNLRDTRISGQLINIEKDNGRPGRRDDYRGGDDRRGGDRRDDRRGGYRRDRRDDRRDD
RRGDRRDRGDRRDRYRG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtagacgaaggcagcatcacacttgatgatgtaattgcc
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcacaagaagcg
gacagtgacagtaacgatggctttgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtcgcctattcaagcgcagaccatcccagtcctc
atggagggacacgatgtgatgggtctggcacagacgggtacgggtaagaccgctgcgttt
gccctcccgatcctttcccgtatcaatgtgaagaagcgccacccgcaggcgctggtcctt
gctcctactcgtgagcttgcacttcaggttgctgactctttccagtcttttgcagaccac
ctcggtgacattcatgtcctaccgatttacggtggacaggcatatggtattcagctgtca
ggcctccgacgtggtgcgcagattatcgtgggtactccaggtcgtgttattgaccacctg
gaaaagggctcactcgatatttccaacctgaactatctcgttcttgacgaggcagatgag
atgctcagcatgggcttccaggaagatattgagcgcattcttgaggacactcctgctgat
aagcaggttgccctgttctctgcaacgatgcctaatggcattcgtcgtttgagcaagcag
tatatgaaggatcctcgtgagattcaggtgaagtccgagactcggaccaacaccaacatc
acacagcgattcttaaatgttgctcaccgcaacaagctggatgctttgactcgtatcctt
gaggttacagagtttgaagcgatgatcatgttcgtacgcacgaagcatgaaaccgaagag
gttgcagaaaagctgcgcgctcgtggtttctctgctgctgccatcaatggtgacattgca
caggcgcagcgtgagcgtactgtggaccagcttaaggatggtcgcctagacattcttgtg
gctacagacgtagcagcgcgtggtctagacgttgagcgtattacccacgtattcaactac
gacattcctaacgacacggagtcttatgttcaccgcattggacgtaccggccgtgccggg
cgtagcggcgaggcgattctctttgttaccccacgcgagcgtcgtatgctgcgttccatc
gagcgtgctactaacgcagagctcatcgaaatggatcttcctacggtcgatgaggtcaac
gagtctcgtaaagcaaagtttgcagactcgatcacggaatcgctagaagattcccaggtt
gcgattttccggaatctgatcaaggcctacgcagaagagcatgacactccgcttgaggac
attgcggctgctttggctactcaggcccgtgcgggtagcgagttcttgatgaaggaaccg
ccaccggagaagcgtcgtgagcgtcgtgaccgctttgagcgtgatgatcgtcgtggcgac
cgtcgcgatcgcggtgagcgtcgtgaccgtggcgaccgaggtgaccgtggttctcgcttt
gagcgttccggtgatatggctgtgtaccgccttgcggtaggcaagcgtcagcacgttcgt
ccaggcgctatcgttggtgcactggcgaacgagggtggacttagcaacaaggactttggt
cgtatcaccattgctgtggatcacactttggtggagcttcctaaggggcttccacaatcc
gtctttgataatctgcgcgacacccgtatctcgggtcagctgattaacatcgagaaggac
aacggacgtccgggccgtcgcgatgactaccgtggtggcgacgaccgtcgcggtggagat
cgcagggacgaccgtcgtggtggctaccgtcgtgatcgcagggacgaccgccgtgatgat
cgtcgtggcgaccgtcgtgatcgcggtgaccgtcgtgaccgctaccgcggctag
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