Cupriavidus sp. USMAA2-4: BKK79_16725
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Entry
BKK79_16725 CDS
T05072
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK79_16725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuu03019
]
BKK79_16725
Enzymes [BR:
cuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKK79_16725
Messenger RNA biogenesis [BR:
cuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKK79_16725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
AOY93261
LinkDB
All DBs
Position
1:3759924..3761432
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AA seq
502 aa
AA seq
DB search
MTTTSQADTAANADQNANAITFDSFGLDARILRALTEQGYTKPTPIQAQAIPVVLLGKDV
MGAAQTGTGKTAGFALPIIQRLLPLANGSASPARHPVRALMLTPTRELADQVYDNVARYA
KHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEAD
RMLDMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLASSYLTQPVTIEVARSNSANEN
VRQTVYQVEDGQKQAAVVHLLKQRAAQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAI
HGDKTQTERMQTLEGFKNGTIDALVATDVAARGLDIPDMPCVINFDLPFSAEDYVHRIGR
TGRAGASGDALSVFQPGDERLLVDIEKLIKRSIPRATLDGFDPTGERARGEDAERRRARS
EVRRARGESEERPRRKDGNGSGQRPVFRPSDDPFFSRPYEPSAGSAAATPKPEEAAIAAL
GRGRTAPKRPLAALLGGVPRKS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaccagccaagcagacactgcagccaacgcagaccagaacgccaacgccatt
accttcgacagcttcggcttggatgcgcgcatcctgcgtgcgctgaccgagcagggctac
accaagcccacgccgatccaggcgcaggcgattccggtggtgctgctgggcaaggacgtg
atgggcgcggcccagaccggtaccggcaagaccgccggtttcgcgctgcccatcatccag
cgcctgctgccgctggccaatggcagcgcctcgccggcgcgccatccggtgcgcgcgctg
atgctgacaccaacgcgcgagctggccgaccaggtctacgacaacgtcgcgcgctacgcc
aagcacaccgacctgcgcagcacggtggtgttcggcggcgtcgacatgaatccgcagacc
gatgcgctgcgccgtggcgtggaaatcctggtggcgacgccgggtcgcctgctcgaccac
gtgcagcagaaatcggtcaacctgtcgcaggtgcagatgctggtgctggacgaagccgac
cgcatgctggacatgggtttcctgcccgacctgcagcgcatcatcaacctgctgccggcc
cagcgccagacgctgctgttctccgccaccttctcgcccgagatcaagcgccttgcctcg
agctacctgacccagccggtcaccatcgaggtggcgcgcagcaactcggccaacgagaac
gtgcggcagaccgtctaccaggtcgaggatggccagaagcaggccgccgtcgtgcacctg
ctcaagcagcgcgcggcccagggcctgtcgcgccagtgcatcgtcttcgtcaacagcaag
atcggctgctcgcgcctggcgcgccacctggagcgcgagggcatcaacgccgccgccatc
cacggtgacaagacccagaccgagcgcatgcagacgctcgaaggcttcaagaacggcacc
atcgacgcgctggtcgccaccgatgtggctgcgcgcgggctggatattcccgacatgccc
tgcgtgatcaacttcgacctgccgttcagcgccgaggattacgtgcaccggatcggccgc
acgggccgtgccggtgccagcggcgacgcgctgtcggtattccagcctggcgacgagcgc
ctgctcgtcgatatcgagaagctgatcaagcgcagcatcccgcgtgccacgctggatggc
ttcgatcccacgggcgagcgtgcgcgcggcgaagatgccgaacggcgtcgtgcccgctcg
gaagtccgtcgcgcccgcggcgagtccgaggagcgcccgcgccgcaaggatggcaatggc
tcggggcagcgccccgtcttccgtccgtcggacgaccccttcttctcgcgcccctacgag
cccagcgccggcagtgccgccgccacgccgaagccggaggaggccgccatcgccgcgctc
gggcgcggccgcaccgcgccgaagcgcccgctggccgcactgctcggcggcgttccgcgc
aagtcctga
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