Cupriavidus sp. USMAA2-4: BKK79_17290
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Entry
BKK79_17290 CDS
T05072
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK79_17290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuu03019
]
BKK79_17290
03009 Ribosome biogenesis [BR:
cuu03009
]
BKK79_17290
Enzymes [BR:
cuu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKK79_17290
Messenger RNA biogenesis [BR:
cuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKK79_17290
Ribosome biogenesis [BR:
cuu03009
]
Prokaryotic type
rRNA processing factors
BKK79_17290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOY93360
UniProt:
A0A1D9H126
LinkDB
All DBs
Position
1:complement(3885696..3888842)
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLTVPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAAGDNRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNLNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEDSMASYKMAEAAAKELEADTSYSSRKKEDAKPRQEAAVKGITPEQP
APVSTPRPERAPRQEVPAAPPVPATQPVASGGFIAWLKGLFGAKPAAPAVEPAKPVAAEA
RTGEGRRERGPRGERTERGERGQGGRGERGDRGERTDRGERAERGERQSGRGQRGERGER
PATEQKGERQPRPQRQPADLQAAPASRQAEAGQERRERGERPDRGERGERSERGERAERG
ERRERNRDRQRERGEARESEGAEEVAALAAVPEGLSAQPGTAAAAREAEDSARLDLPEGT
EGAEAAEAGEGEERRRRNRRGRNRYRREREDGQQNGEAGEAGDVGAAPAPLAAVGAEADA
VATAAVTQVEAVAVARVEPVAETVAAAQPAIAAAAAAAESAPVAVEHAAVEAAANATPAV
PLTEPAHAEPAPVTVAAAAPIQPAPATTVAEPVAEPAIAAVPAPEAAAVAAPAVTAVEAA
PAAAVVAPAPAVQAAAPGNLEPMLAAAGLQWVHTDSDKYRAAQEAAARIVPAPRVPRERK
PLPPLPEGPMILVETGGNQVEMISSAHQ
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacgcagcaagaggaactgcgcgtcgcgattgtcgat
ggccagaagctgatcgacatcgacatcgaggccgccgggcgcgaacagcgcaagggcaac
atctacaagggcgtgatcacccgtatcgagccctcgctggaggcctgcttcgtcaactac
ggcgaagaacgccacggcttcctgccgttcaaggaagtcgcccgcgcctatttcaaggaa
ggcatcgacgtgcgcaatgcacgcatccaggatgccttgcacgaaggccaggaactgatc
gtccaggtagaaaaggaagagcgtggcaacaagggcgccgccctgaccaccttcatctca
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagaccatggcgcagctgaccgtgccc
gaaggcatgagcatcatcgcccgtaccgcgggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaattgtggaaggccatcgacggcgcagccggcgacaac
cgggccccgctgctgatctacctggaatcgagcctggtgatccgcgccatccgcgactac
ttccagcccgatatcggcgaaatcctgatcgataccgacgagatctacgagcaggcccgc
gccttcatgagcgtggtgatgccggacaacctgaaccgggtcaagaagtaccgcgacgat
gtccccctcttctcgcgcttccagatcgagcaccagatcgagtcggcctattcgcgcatg
gtgatgctgccgtccggcggcgccatcgtgatcgaccacaccgaggccctggtctccgtg
gacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctggaagcggccgatgagattgcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtggaaacccgc
ctgaaggacgcgctgcgccatgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgcccgtcgctgtcggaaggctcccacatc
acttgcccgcgctgcaacggcacgggccatatccgcgatacggaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgccatccactgccag
gtaccggtggaggtggccgccttcctgctgaacgagaagcgccaggaaatcaacctgatc
gaacttcgcttcaaggtcaatgtgctgctgatccccaacaagcacctggagacgccgcac
tacaagctggaacgcctgcgccacgacgatccgcgcctggaggacagcatggccagctac
aagatggccgaggccgccgccaaggagctggaagccgataccagctacagcagccgcaag
aaggaagatgccaagccgcgccaggaagccgcggtgaagggcatcacgcccgagcagccg
gccccggtgtcgacgccgcgccccgagcgcgcgccgcgccaggaagtgcctgctgcgccg
cccgtgcctgccacccagccggtcgccagcggtggcttcatcgcctggctgaagggcttg
ttcggcgccaagccggcagccccggccgtcgagcccgccaagccagtggccgccgaggca
cgcaccggtgaaggccgccgcgagcgtgggccgcgcggcgaacgcaccgaacggggtgag
cgtggccagggtgggcgcggcgagcgcggagaccgtggtgagcgcaccgatcgcggtgag
cgcgccgagcgcggcgaacgccagagtggccgcggccagcgcggcgaacgcggcgagcgg
ccggcgacggagcagaagggcgaacgccagccgcgtccgcagcgccagccggccgacctc
caggccgcaccggcctcccgccaggcggaagccggccaggaacgccgcgagcgcggcgag
cgccccgaccggggtgagcgtggcgagcgctcggaacgcggtgaacgggccgaacgcggc
gaacgtcgcgagcgcaaccgtgaccgccagcgcgaacgcggcgaagcccgcgagagcgag
ggcgccgaggaagtcgcagcacttgccgccgtgccggagggcctctcagcccagcccggc
accgccgctgcggcacgtgaagccgaggacagcgcacgcctcgacctgccggaaggcacc
gaaggcgctgaagcggccgaggctggcgagggcgaagaacgccgccgccgcaaccgccgc
ggccgcaaccgctatcgccgcgagcgcgaggacggtcaacagaatggcgaagctggtgaa
gccggcgacgtcggtgcggcgccggcgcctctggccgcagttggcgcggaggcggacgca
gtcgccaccgccgcggtgacgcaggtcgaggcagtcgccgtggcacgcgtcgagccggtg
gccgaaaccgtggctgccgcgcaaccggcaatcgcggcagcggcagcggcagccgagtcc
gctccggtggcagtcgagcatgcagccgtcgaagccgctgcgaatgccacgccagcggtt
ccgctgaccgagccggcccatgccgagcccgctcccgtcacggtggcagccgccgcgccg
atccagccggcaccggccacgacggtggccgaaccggtggccgaaccggcgatcgccgcc
gtcccggcaccggaagccgctgccgtagcagcacccgcggtcacggccgtggaagctgcg
ccggcggctgccgtcgtggctcccgcccctgccgtgcaggccgctgcgccgggcaacctg
gagccgatgctggctgctgccggcctgcagtgggtccataccgacagcgacaagtaccgt
gccgcccaggaggccgccgcccgcatcgtgcccgcgccgcgggtgccgcgcgagcgcaaa
cccctgcctccgctgcccgagggtccgatgatcctggtggaaaccggcggcaatcaggtt
gaaatgatctcttccgcgcaccagtaa
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