Cupriavidus sp. USMAA2-4: BKK79_18250
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Entry
BKK79_18250 CDS
T05072
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu02024
Quorum sensing
cuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK79_18250
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BKK79_18250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuu03019
]
BKK79_18250
03036 Chromosome and associated proteins [BR:
cuu03036
]
BKK79_18250
Messenger RNA biogenesis [BR:
cuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BKK79_18250
Chromosome and associated proteins [BR:
cuu03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BKK79_18250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
SRP14
Motif
Other DBs
NCBI-ProteinID:
AOY93522
LinkDB
All DBs
Position
1:4095797..4096036
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AA seq
79 aa
AA seq
DB search
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARAVNFRVDDSAEG
NT seq
240 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaaagggcaactgctacaagacccgttcctgaacgcgctgcgcaaggagcac
gtgccggtttccatctatctcgtcaatggcatcaagctgcagggcaatatcgagtccttc
gaccagtacgtcgtcctgctgcgcaacacggtgacgcagatggtctacaagcatgcgatc
tccaccgtcgtcccggcgcgcgcggtcaatttccgcgtcgatgattcggccgaaggctga
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