KEGG   Cupriavidus sp. USMAA2-4: BKK79_18250
Entry
BKK79_18250       CDS       T05072                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
cuu  Cupriavidus sp. USMAA2-4
Pathway
cuu02024  Quorum sensing
cuu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cuu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BKK79_18250
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BKK79_18250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cuu03019]
    BKK79_18250
   03036 Chromosome and associated proteins [BR:cuu03036]
    BKK79_18250
Messenger RNA biogenesis [BR:cuu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BKK79_18250
Chromosome and associated proteins [BR:cuu03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BKK79_18250
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: AOY93522
LinkDB
Position
1:4095797..4096036
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARAVNFRVDDSAEG
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaactgctacaagacccgttcctgaacgcgctgcgcaaggagcac
gtgccggtttccatctatctcgtcaatggcatcaagctgcagggcaatatcgagtccttc
gaccagtacgtcgtcctgctgcgcaacacggtgacgcagatggtctacaagcatgcgatc
tccaccgtcgtcccggcgcgcgcggtcaatttccgcgtcgatgattcggccgaaggctga

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