Cupriavidus sp. USMAA2-4: BKK79_18305
Help
Entry
BKK79_18305 CDS
T05072
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK79_18305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuu03019
]
BKK79_18305
03016 Transfer RNA biogenesis [BR:
cuu03016
]
BKK79_18305
Enzymes [BR:
cuu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BKK79_18305
Messenger RNA biogenesis [BR:
cuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKK79_18305
Transfer RNA biogenesis [BR:
cuu03016
]
Prokaryotic type
tRNA degradation factors
BKK79_18305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
WHD_RNase_R
CSD
HTH_11
Peptidase_S15
Motif
Other DBs
NCBI-ProteinID:
AOY93531
LinkDB
All DBs
Position
1:4105465..4108062
Genome browser
AA seq
865 aa
AA seq
DB search
MNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALAVTRKEHDGFQKRLAAMERDGQVELN
RKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGDDDIFLPERELQKAMHNDRAQVRVVGY
DRRGRPEGQIVEILERANRRVIGRLLSEGGVLVVAPEDKRISQDILIPPNAQGKAKVGQV
VSVEIVEYPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFSAAAAAEAAALPDT
VQPSDLQHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSKGWRLIVAIADVSHYVRP
GTPLDTDALDRATSVYFPRRVIPMLPEKLSNGLCSLNPQVDRLCMVCDAVITAKGEIKAY
QFYPAVMHSAARLTYNEVWAVLSNTKGPEAHKRVELVPQLQDLYELFQVLLKSRRARGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLAANVCAADFLERFGHPALYRVHA
GPSEEKLKLLREFLKTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLSYSAYTHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAYADGVVLNTAIAP
KARRLQAKDAEQKAERVAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGNEFAGTVSAVTSFGIFVQLDELYVEGLIHVSELGSDYFQYDEARNELRGERTGIRYR
LTDRVRVQVLRVDLDARKIDFGLVQEPSAKALRGGRPPASETAPHVPAAHAQPARKRGKQ
LAALLGGTSKPEESFDETLDRVIEEQPVFEAVIMPAKAPGKAHVPAGKPAKRAAKPKPQH
LATPRKGAKPRPKPAGKSGRPARKR
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatccccagccgggaagaaatcctgggcgtgctgagaact
tccggctcgccgctgtcggcgggggatatcgccaaggctctggccgtcacgcgcaaggag
catgacggcttccagaaacggctcgccgccatggagcgcgacgggcaggtcgaattgaac
cgcaagggccgctacgagctggcccaccagccgaacttcgtcaccgggcgcgtgcaaggc
caccgcgacggcttcggcttcctgatccgcgacgacggcgacgacgatatcttcctgccc
gagcgcgaactgcagaaggccatgcacaacgatcgcgcgcaggtgcgcgtggtcggctac
gaccggcgcggtcgtccggaaggccagatcgtcgagatcctggagcgcgccaaccggcgc
gtgatcggccgcctgctcagcgagggcggcgtgctggtggtggcgccggaggacaagcgc
atcagccaggacatcctgatcccgcccaacgcgcagggcaaggccaaggtggggcaggtg
gtcagcgtcgagatcgtcgaatacccggaccgctacgtgcagccggtggggcgcgtggtc
gaggtgctgggcgacatcgacgacccgggcatggagatcgaaatcgccgtgcgcaagtac
ggcgtgccgcatgccttctccgctgcagccgcggccgaggcggccgcgttgcccgacacg
gtgcagccgtccgacctgcagcaccgcatcgacctgcgcgacgtgccgctggtcaccatc
gacggcgaggacgcacgcgatttcgatgacgcggtctattgcgaaccggtcaagatcggc
cgcagcaagggctggcgcctgatcgtggcgatcgccgacgtgtcgcactacgtgcgcccc
ggcacgccgctcgacaccgacgcgctcgaccgcgccacctcggtctacttcccgcgccgc
gtgatcccgatgctgccggagaagctgtccaacggcctgtgctccctgaacccgcaggtg
gaccgcctgtgcatggtgtgcgacgcggtcatcaccgccaagggcgagatcaaggcctac
cagttctatcccgcggtgatgcactcggccgcgcgcctgacctacaacgaggtctgggcc
gtgctgtcgaacaccaaggggcccgaagcccacaagcgcgtcgagctggtgccccagctg
caggacctgtacgagctgttccaggtgctgctcaagtcccggcgcgcgcgcggtgcgatc
gacttcgacaccaccgagacctatatcgtctgcaatgcgcagggcaagatcgagcagatc
ctgccgcgtacccgcaacgatgcgcaccgcctgatcgaggagtgcatgctggccgccaac
gtgtgcgcggccgacttcctcgaacgcttcggccaccctgcgctctaccgcgtgcatgcg
ggcccgagcgaggaaaaactgaagctgctgcgcgagttcctcaagaccgccggcctcagc
ctgggcggcggggacaagccgcaggcctcggactatgccgaggtgatggacaagatcaag
tcgcgtcccgatgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggctgtc
tacagcccggacaatatcggccacttcggcctgtcctattccgcctacacgcacttcacc
agcccgatccggcgctatccggacctgctggtgcaccgcgccatcaaggcggtgctggcc
cataccaagtatcagccggcctatgccgacggcgtcgtgctcaataccgcgatcgcaccc
aaggcgcgccgcctgcaggccaaggatgcggagcagaaggccgaacgggtggccgcgcgc
gcgcgccgcaacgaggcgatctgggacgagctgggcctgcactgctcggccaacgagcgc
cgcgcggacgaggcttcgcgcgatgtcgaggcctggctcaagtgctacttcatgcgcgac
aagctgggcaatgagttcgccggcaccgtcagcgccgtgacctccttcggcatcttcgtg
cagctcgacgagctgtacgtcgagggcctgatccatgtgagcgagctgggcagcgactat
ttccagtacgacgaggcgcgcaacgaactgcgcggcgagcgtaccgggatccgctaccgc
ctgaccgaccgcgtacgcgtgcaggtgctgcgcgtcgacctggacgcgcgcaagatcgac
ttcggcctggtgcaggaaccctctgccaaggcgttgcgcggcggccgcccgcctgcatcg
gagactgccccccacgtgccggccgcgcacgcccagccggcgcgcaagcgcggcaagcaa
ctggcagccctgcttggcggcacctccaagccggaagagtccttcgacgaaacgttggac
cgcgtgatcgaggaacagccagtgttcgaggccgtgatcatgccagccaaggcacccggc
aaggcgcacgtgccggcgggcaagcccgccaagcgtgccgccaagcccaagccgcagcac
ctcgccacgccgcgcaagggcgccaagccgcgtcccaagcctgccggcaagagcggccgc
cccgcgcgcaagcgctga
DBGET
integrated database retrieval system
