Cupriavidus sp. USMAA2-4: BKK79_18355
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Entry
BKK79_18355 CDS
T05072
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuu03019
]
BKK79_18355
Enzymes [BR:
cuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKK79_18355
Messenger RNA biogenesis [BR:
cuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKK79_18355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_19
T2SSE
AAA_22
nSTAND3
NACHT
AAA_30
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOY93541
UniProt:
A0A1D9H160
LinkDB
All DBs
Position
1:4117282..4121385
Genome browser
AA seq
1367 aa
AA seq
DB search
MSEQRPVKPLPPERQHAAPARSRPAPRPGPQSASPNGPQPPRRTAVGAADAAAPVRAGGP
APDGRAQRGARPRQGDAERPPRTPRPRRPANPLPEITFPEALPVSARREEIAAALRAHQV
VVVSGETGSGKTTQLPKICLSIGRGPGADGSGGLIGHTQPRRIAATSTAKRIAQELGTPI
GEHVGYQVRFNDTMSPGASVKLMTDGILLAETQNDPLLRAYDTIIIDEAHERSLNIDFLI
GYLRQILPRRPDLKVIITSATIDAQRFAEHFTLQGKPAPVIEVSGRLYPVEVRYRPIQQD
APGTPGTAGDPHKAAAARERDLYDGIVDAVDELCRLGAGDVLVFLPGEREIRETAEALRK
HHPPHTEILPLFARLSVQEQERVFRPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVK
RYSYRNKVEQLQIESISQAAANQRAGRCGRVADGVCIRLYEESDFAGRPRFTDPEILRSS
LAAVILRMKALRLTAIESFPFIEPPLGRAIADGYQLLQELGAIDNKGDSYELTPVGRQLA
KLPLDPRVGRMILAARDHQCLREVLVIASALSVQDPRERPQEAQEAADQAHRKFVDEKSE
FLGWVRMWKWFEEAVAHKKTNRQLQEQCRAHFLSHVRLREWRDVHSQLLTTVTEQGWRLN
DSEPTFEQMHKALLTGLLGNIGCKLEEADGRGREYLGARGIKFHLWPGSFIARKVGRWIM
AAELVETSRLFARTLARIEPEWLEQVGGHLLKVSWSDPHWEKKAGQVLALERATLYGLVV
YQHRRVHYGPMNPAEAREIFIRRALVDGELDTRLAFFAHNQRLVREIENLEHKSRRQDVL
VDDELIYAFYDRAIPADIHQQASFEQWYKQAAADDRKLLYLNRDELMRHEAAGITTELFP
KVLSVAGVDMALTYHFEPGSHRDGVTLAVPLYALNQIRPERCEWLVPGMIKEKVHLLLKS
LPQKLRRHCVPLPDYAAGFVERRPFGEGELVDVLIADIREQTGTMVKRADFKLETLSAHH
FMNFKVVDEHGRQLEMGRNLAQLRAELGGQAQQSFQSLAARGAGQAQAAGGSGAAAVPAG
QYERLTAWSFGELPELLEVRKGNQTLFGYPALVDRGSHCDIEVFDDPQEAARIHRTGLRR
LFALQLREQVKFVEKNIPGLQQMAMQYMNLGTQEMLRDQIVALALERACLQEPLPRNAEE
FAARKDEGRARLSLLAQEIARLVGAVLAEYAGLPRKLLQAKSFAAAYADMEGQLGRLMGK
QFVIDTPYAQLVHYPRYLKGIAMRVDKIKGDPARDGQRMQEMAPLQQQWQRAEKQLRAQG
RGVEDARLDEFRWMLEELRVALFAQELRTPVPMSVKRLQKVWESMQR
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacaacgtcccgtcaagccgctgccgccggagcggcagcacgccgcgccggcc
aggtcccgcccggcgccccgtcccggccctcagtccgccagcccgaacggcccgcagccc
ccgcgccggaccgccgtcggcgcggccgacgccgctgcgccggtgcgtgccggcgggccg
gcaccggacggccgcgcgcagcgcggcgcgcgcccgcgccagggcgatgccgagcgtccc
ccacggaccccacggccgcgccgcccggccaatccgctgccggagatcacgttccccgag
gcgctgccggtttcggcgcggcgggaagagatcgccgcggcgctgcgcgcgcaccaggtg
gtggtggtgtcgggcgagaccggctcgggcaagaccacgcagttgcccaagatctgcctg
tcgatcgggcgcggtccgggcgcggacggcagtggcggcctgatcggccatacccagccg
cgccgcatcgcggccacctccaccgccaagcgcatcgcccaggagctgggtacgccgatc
ggcgagcacgtcggctaccaggtgcgcttcaacgacaccatgtcgcccggcgcctcggtc
aaactgatgaccgacggtatcctgctggccgagacgcagaacgatccgctgctgcgcgcc
tatgacacgatcatcatcgatgaggcgcacgaacgcagcctcaacatcgatttcctgatc
ggctacctgaggcagatcctgccgcggcggccggacctgaaggtcatcatcacctcggcc
accatcgacgcacagcgctttgccgagcacttcaccctgcagggaaagccggcgccggtg
atcgaggtcagcggccgcctgtacccggtggaggtgcgctaccggcctatccagcaggat
gcgccgggcacgccgggcacggcaggcgacccgcacaaggccgctgccgcgcgcgagcgc
gacctgtacgacggcatcgtcgatgccgtcgacgagctgtgccggctgggggcgggcgat
gtgctggtgttcctgccgggcgaacgcgagatccgcgagacggcggaggcgctgcgcaag
caccatccaccgcacacggagatcctgccgctgtttgcgcggctgtcggtgcaggagcag
gagcgggtgttccggccctccaacgcacgccgcatcgtgctggccaccaatgtggcggaa
acctcgctgaccgtgcccggtatccgctacgtggtcgataccggcctggcgcgcgtcaag
cgctactcctatcgcaacaaggtcgagcagttgcagatcgagtcgatctcgcaggcggcg
gccaaccagcgcgccggccgctgcggccgggtcgcggacggcgtctgcatccggctctat
gaggaatcggatttcgccggccgcccgcgcttcaccgatcccgagatcctgcgctcgtcg
ctggccgcggtgatcctgcgcatgaaggccttgcgcctgaccgcgatcgagtcattcccc
ttcatcgagccgccgctcggccgagccatcgccgacggctaccagctgctgcaggagctg
ggcgcgatcgacaacaagggcgacagctacgagctgacgcccgtcgggcgccagcttgcc
aagctgccgctggacccgcgcgtgggccgcatgatcctggccgcgcgcgaccaccagtgc
ctgcgcgaggtgctggtgatcgccagcgcgctgtcggtgcaggatccgcgcgaacgcccg
caagaagcccaggaggcggccgaccaggcccaccgcaagttcgtcgacgagaagtcggag
ttcctcggctgggtgcgcatgtggaagtggttcgaggaggcggttgcgcacaagaagacc
aaccgacagttgcaggagcagtgccgcgcgcatttcctctcccacgtgcgcctgcgcgaa
tggcgcgacgtgcattcgcaactgctgaccaccgtgaccgagcagggctggcgcttgaac
gacagcgagccgaccttcgaacagatgcacaaggccctgctgaccggcctgctgggcaat
atcggctgcaagctggaagaggccgacggacgcggccgcgagtacctgggcgcccgcggc
atcaagttccacctgtggccgggttcctttatcgcgcgcaaggtggggcgctggatcatg
gcggcagagctggtcgagaccagcaggctgttcgcgcgcacgctggcacgcatcgagcca
gagtggctggagcaggtcggcggccacctgctcaaggtgagctggagcgacccgcactgg
gagaaaaaggccggccaggtgctggcgctggagcgcgccaccctgtacggcctggtggtc
taccagcaccggcgcgtgcattacgggccgatgaatccggccgaggcgcgcgagattttc
atccggcgtgcgctggtcgacggcgagctggacacccggctggcgttcttcgcgcacaac
cagcgcctggtgcgcgagatcgagaacctcgaacacaagtcgcgccggcaggacgtgctg
gtcgacgatgaactgatctacgctttctacgatcgcgccatccccgccgacatccaccag
caggccagcttcgagcagtggtacaagcaggccgccgccgacgaccgcaagctgctctac
ctgaatcgcgacgagctgatgcggcacgaagcggctggcatcaccaccgagctgtttccc
aaggtgctgagcgtggccggcgtcgacatggcgctgacctaccatttcgagccgggcagc
catcgcgacggcgtgacgctggcggtgccgctgtatgccctcaaccagatccgccccgag
cgctgcgaatggctggtgccgggcatgatcaaggagaaggtgcacctgctgctgaagtcg
ctgccgcagaagctgcgccgccactgcgtgccgctgcccgactacgcggccggcttcgtc
gagcgccgtcccttcggcgaaggcgagctggtggacgtgctgatcgccgatatccgcgag
cagaccggcaccatggtcaagcgtgccgacttcaagctcgagaccttgtccgctcaccac
ttcatgaatttcaaggtggtcgacgagcacggccgccaactggagatggggcgcaacctg
gcgcaactgcgcgccgaactcggcgggcaggcgcagcagtcgttccagagcctggccgcg
cgcggcgcgggtcaggcgcaggcggccggcggcagtggtgccgccgcggtgccggccgga
cagtacgagcggctgacggcctggtcgttcggcgagctgccggagctgctggaggtgcgc
aagggcaaccagacgctgttcggctatccggcgctggtcgaccgcggcagccactgcgac
atcgaagtgttcgacgatccgcaggaagcggcgcgcatccaccgcaccggattgcgccgc
ctgttcgcgctgcagctgcgcgagcaggtcaagttcgtcgagaagaacatcccggggctg
cagcagatggcgatgcagtacatgaacctgggcacgcaggaaatgctgcgcgaccagatc
gtggcgctggcgctggagcgtgcctgcctgcaggagccgctgccgcgcaacgcggaggag
ttcgccgcgcgcaaggacgagggcagggcgcgcctgtccctgctcgcgcaggagatcgcg
cggctggtcggcgcggtgctggccgagtatgcggggctgccgcgcaagctgctgcaggcc
aagtccttcgccgccgcctacgcggacatggaagggcagctcgggcggctgatgggcaag
cagttcgtcatcgacacgccctatgcccagctggtgcactatccgcgctacctgaagggt
atcgccatgcgtgtcgacaagatcaagggcgatccggcgcgcgatggccagcgcatgcag
gaaatggcgccgctgcagcagcagtggcagcgtgccgaaaagcagttgcgtgcgcaaggg
cgcggcgtggaagacgccaggctcgacgagttccgctggatgctggaggaactgcgcgtg
gcgctcttcgcgcaggagctgcgcacgccggtaccgatgtcggtcaagcggctgcagaag
gtgtgggagtcgatgcagcgctga
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