Cupriavidus sp. USMAA2-4: BKK79_32290 Help Entry BKK79_32290       CDS       T05072                                  Name (GenBank) excinuclease ABC subunit A   KO K03701   excinuclease ABC subunit A Organism cuu  Cupriavidus sp. USMAA2-4 Pathway cuu03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:cuu00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     BKK79_32290  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cuu03400]     BKK79_32290 DNA repair and recombination proteins [BR:cuu03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      BKK79_32290   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       BKK79_32290 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ABC_tran UvrA_inter AAA_29 AAA_21 SMC_N nSTAND1 AAA_16 AAA_25 RsgA_GTPase AAA_22 AAA_23 AAA_33 AAA_18 NACHT UvrA_DNA-bind nSTAND3 Viral_helicase1 ATPase DnaJ_CXXCXGXG DUF4350 RNA12 HTH_15 Motif Other DBs NCBI-ProteinID:  AOY96282 UniProt:  A0A1D9H8T3 LinkDB All DBs Position 2:2806988..2812876 Genome browser AA seq 1962 aa AA seqDB search MSRENLISIRGARQHNLKEVDLDLHTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETF SAYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE LFDRDTAQPVRHDTPETIYAELLARTAPGTAHAGARLVVTFPVELPSSTTEEEVQQWLSV SGYTRVQAQREADSPTGRRKILDVVADRFRLPGADKARVIEALEASLKRGGGRVDVHVLA EEGEAQLWRFSTGLHCPDSDLRYAEPQPALFSFNSAYGACDTCRGFGRVIGVDLGLVIPD GRKSLRDGAIKPMQTPAWKECQDDLMRYAARAGIPRDIPWEQLSEAERHWVVHGSPEWDG QWNKQWYGVMRFFDYLESKAYKMHIRVLLSKYRSYTPCETCGGARLKTESLLWRLGSRDN ADAVLAPAQRFLPRGTHWQREQLEALPGLTVHDLMLLPIERIRRFFDTLTLPSALLDDAL KLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPS IGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGTIVFDGT PGQIRSVATLTGDYLGGRRRVADATHWQRRPVADDTPRIVLEGASEHNLQDVTVSIPLHR LVCVTGVSGSGKSTLLQDVLYPAMARHFGKATEAPGAYRALSGAGQVSDVVFVDQSPIGK TARSNPASYVGAFDEIRKLFAKAPVALQRGYTAGTFSFNSGDGRCPTCGGSGFEHVEMQF LSDVYLRCPDCDGMRYRAEVLEVKIERSGADGRPRLLSVADVLDLTVSEAAALFARDAGV LRVLQPIEDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAETAQATSGRVRPLPEEGKLFM FDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWLVDLGPEGGDAGGRV LCEGTPETVKRCAASHTGRALAQYEEAMAAMAAAASEAAAPAAEGEGEGLPLQTALQAAR ARRLPPQSVRIVNAREHNLKALDVDIPHGKFNVVTGVSGSGKSTLAFDILFHEGQRRYLE SLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKL GIQHCIHDGTPVTSQSMESIAAQLLRDYRGQHVGLLAPLVVNRKGVYTDLAKWAKARGNT HLRVDGEFLPVDPWPRLDRFREHTIELPVGDLVVSPDDEGRLRELLAQALEIGKGVMHLL APLDGLDHAMRQGGTARVGETKVFSTKRACPVCGTSYAELDPRMFSYNSKHGWCTSCVGT GLQLTREQRAAYDDTVLAEDGRGREQTLPSEEQEPEGVGETPCADCGGTRLNPAARAVTF DACAIVDVAQWTVSDTRAWIAGLSLSGRDAEIARDVVSEIRSRLEFLEEVGLGYLSLDRA APSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNRILLDALRKLGDKGNTLVV VEHDEDTIRRADHIIDIGPGAGKRGGSLVAQGGVAELEASAASTTGRFLANPMVHPLQPR RPVRPGRAGGPDEQAEPAQWLTVHGASLHNLRKVTAALPLGRLVAITGVSGSGKSTLARD VLMANLLDAVGRSVLSSPATRRARATAQKEAAEAGKAKARAKVEARPEWRGCEQITGWEQ IDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFADTLEARARGYSASRFSFNTGDGRCP ACEGQGVRTIGMSFLPDVKVPCDVCHGQRFNAETLAVTWRGKNIGDVLTMEIDEAVEFFA AMTSIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHT LYVLDEPTVGLHMADVARLIRVLHRLADGGHSVVVIEHDLDVIAEADWILDLGPEGGAAG GTIVGAAAPEALARLQASHTGAALVPVLARQAPAAAREAREA NT seq 5889 nt NT seq  +upstreamnt  +downstreamnt ttgtccagggaaaatctgatcagcatccgcggcgcgcgccagcacaatctcaaggaagtc gacctcgacctgcacaccggtgagttgaccgtggtgaccgggccgtccggttcgggcaag tccagcctggtcttcgacaccctgtacgccgaaggccagcgccgctacgtcgagaccttc agcgcctacgcgcgccagttcctcgaccgcatggaccgtccgcaggtggatcgcgtcgac ggcgtgccgcccgcgatcgccatcgaccagaccaatccggtgcgcagctcgcgttcgacg gtcggcaccatgaccgagctgaacgaccacctgaagctgctgtacgcgcgcgcggccgag ctgttcgaccgtgacaccgcccagccggtgcggcacgacacccccgagaccatctatgcc gagctgctggcgcgcaccgcgcctggcaccgcgcacgcgggtgcgcgcctggtggtgacc ttcccggtcgagctgcccagcagcaccaccgaggaagaggtgcagcagtggctgtcggtg agcggctatacgcgcgtgcaggcgcagcgcgaggcggactcgccgaccgggcggcgcaag atcctggacgtggtggcggaccgcttccgcctgccgggagcggacaaggcccgcgtgatc gaggcgctggaagcctcgctcaagcgcggcggcggacgcgtcgacgtccacgtgctggcc gaggagggcgaggcgcagttgtggcgcttctccaccgggctgcattgcccggacagcgac ctgcgctatgccgagccccagccggccttgttttccttcaattcggcctacggcgcctgc gacacctgccgcggattcggccgcgtgatcggcgtggacctcggcctggtgatccccgac ggccgcaagagcctgcgcgacggcgccatcaagccgatgcagacgccggcctggaaagaa tgccaggacgacctgatgcgctacgcggcgcgcgccggcatcccgcgcgacattccctgg gagcagctcagcgaggccgagcggcactgggtggtgcacggctcgccggagtgggacggc cagtggaacaagcagtggtatggcgtgatgcgcttcttcgactacctggagtcgaaggcc tacaagatgcacatccgcgtgctgctatcgaagtaccgcagctatacgccctgcgagacc tgcggcggcgcgcgcctgaagaccgagtccctgctgtggcgcctgggcagccgcgacaac gccgatgccgtgctggcaccggcgcagcgtttcctgccgcgcggcacgcactggcagcgc gagcagctggaggcgctgccgggcctgaccgtgcacgacctgatgctgctgccgatcgag cgcatccgccgcttcttcgacaccctgaccctgcccagcgcactgctggacgacgccctc aaactgctgctggccgaggtgcgcacgcgcctgaagtacctgtgcgacgtcggcctgggc tacctgacgctggaccgccagagccgcacgctgtcgggcggcgaggtgcagcgcatcaac ctgaccacggcgctgggcacctcgctggtcaatacgctgttcgtgctcgacgaacccagc atcggcctgcacccgcgcgacctgaaccgcatcgtcgaggccatgcaccgcctgcgcgac gccggcaacaccttggtggtggtcgagcacgatccgtcggtgatgctggccgccgaccgc ctgatcgacatgggcccgggaccgggcgagcgcggcggcaccatcgtcttcgacggcacg ccggggcagatccgcagcgtcgccacgctgaccggcgactacctcggcggacgccgccgc gtggccgacgccacccactggcagcgccggccggtggcggacgacacgccgcgcatcgtg ctggagggtgccagcgaacacaatctgcaggacgtcacggtatcgatcccgctgcaccgc ctggtatgcgtgaccggggtgtcgggctcgggcaagtcgacgctgctgcaggacgtgctc tacccggccatggcacgccacttcggcaaggccaccgaagcgcccggcgcctaccgcgcg ctgtccggcgccggccaggtcagcgacgtggtcttcgtcgaccagtcgccgatcggcaag accgcgcgctcgaacccggccagctacgtcggcgccttcgacgagatccgcaagctgttc gccaaggcgccggtggcgctgcagcgcggctacaccgccggcaccttcagcttcaactcg ggcgacgggcgctgccccacctgcggcggctcgggcttcgagcacgtcgagatgcagttc ctgtccgacgtctacctgcgctgcccggactgcgacggcatgcgctaccgtgccgaggtg ctggaggtcaaaatcgagcgcagcggcgccgacgggcggccgcgcctgctgagcgtggcc gacgtgctggacctgaccgtcagcgaggcggccgcgctgttcgcgcgcgatgccggcgtg ctgcgcgtgctgcagccgatcgaggacgttgggctggagtacgtcaagctgggccagccg gtgccgacgctgtcgggcggcgaggcgcagcgcctcaagctggccggcttcctcgccgag accgcgcaggccaccagcgggcgggtcaggcccttgcccgaggaaggcaagctcttcatg ttcgacgagcccaccaccggcctgcacttcgacgatatcgccaagctgatgcgggccttc ggcaagctgctcgacggcggccactcgctgatcgtgatcgaacacaacctggacgtggtc cgcgccgccgactggctggtcgatctcggccccgagggcggcgacgcgggcgggcgcgtg ctgtgcgaaggcacgccggaaacggtcaagcgctgcgccgcatcgcataccggccgggcc ctggcgcagtacgaggaagcgatggcggccatggccgccgcggcgagcgaggcggccgcg ccggcagcggagggagaaggcgagggactgccactgcagaccgcgctgcaggcggctcgg gcacggcgcctgccgccgcagtcggtgcgcatcgtcaacgcgcgcgagcacaacctgaaa gcgctcgacgtcgacatcccgcacggcaagttcaacgtggtcaccggcgtgtcgggctcg ggcaagtccacgctggccttcgacatcctgttccacgagggccagcggcgctacctggaa tcgctcaatgcctatgcgcgctccatcgtgcagccggccggccggcccgaggtggacgcg gtgtacggcatcccgccgaccgtggcgatcgagcagcgcctgtcgcgcggcggccgcaag agcacggtggccaccacctccgaggtctggcacttcctgcgcctgctctacgtcaagctg ggcatccagcattgcatccacgacggcacgccggtgacctcgcagagcatggaatcgatc gccgcgcagctgctgcgcgattatcgcggccagcatgtcggcctgctggcgccgctggtg gtgaaccgcaagggcgtctataccgacctggccaagtgggccaaggcgcgcggcaacacg cacctgcgcgtcgacggtgaattcctgccggtcgatccctggccgcgcctggaccgcttc cgcgagcacaccatcgaactgccggtgggcgacctggtggtgtcgcccgacgacgaaggg cgcctgcgcgaactgctggcgcaggcgctggagatcggcaagggcgtgatgcacctgctg gcgccgctggacgggctggaccacgccatgcgccagggcggcacggcgcgcgtgggcgag accaaggtcttctccaccaagcgcgcctgcccggtgtgcggcaccagctatgccgagctc gacccgcgcatgttttcctacaacagcaagcacggctggtgcacgagctgcgtcggcacc ggcctgcagctgacgcgcgagcagcgggccgcctacgacgacaccgtgctggccgaggac ggtcgcgggcgcgagcagaccctgccctcggaagagcaggagcccgaaggcgtgggtgag acgccgtgcgccgattgcggcggcacgcggctgaacccggcggcgcgcgcggtcactttc gatgcctgcgccatcgtcgacgtggcgcagtggaccgtgtccgacacgcgcgcctggatc gccggcctgtcgctgtcggggcgcgacgccgagatcgcgcgggacgtggtcagcgagatc cgcagccggctggagttcctggaggaggtggggctgggctacctgagcctggaccgcgcc gcgcccagcctgtccggcggggaagcccagcgcatccggctggcggcccagctcggcagc aacctgcagggcgtgtgctacgtgctggacgagccgaccatcggcctgcatccgcgcgac aaccggatcctgctcgacgccctgcgcaagctcggcgacaagggcaacacgctggtggtg gtcgagcacgacgaagacaccatccgccgcgccgaccacatcatcgatatcgggccgggc gcgggcaagcgcggcggcagcctggtggcccagggcggcgtcgcggagctggaggccagc gccgcttcgaccaccggccgcttcctggccaatccgatggtgcacccgctgcagccgcgt cggccggtgcgcccaggccgcgccggcggaccggacgagcaggccgagccggcgcagtgg ctgaccgtgcacggagcctcgctgcacaacctgcgcaaggtcacggccgcgctgccgctc ggccggctggtggcgatcaccggtgtgtcgggctcgggcaagtccacgctggcgcgcgat gtgctgatggccaacctgctcgacgcggtggggcgctcggtgctgtcgtcgccggccacg cgccgcgcgcgcgccaccgcgcagaaagaggccgccgaggccggcaaggccaaggcgcgc gccaaggtcgaggcgcggcccgagtggcgcggctgcgagcagatcaccggctgggaacag atcgaccgcgtgctggaagtcgaccagacgccgatcggcaagacgccgcgctcctgcccg gccacctacatcggcgtgtgggacaccatccgcaagctgttcgccgacaccctggaggcg cgcgcgcgcggctacagtgcctcgcgcttctccttcaacaccggcgacggccgctgcccg gcctgcgaaggccagggtgtgcgcaccatcggcatgagcttcctgccggacgtcaaggtg ccgtgcgacgtctgccacgggcagcgcttcaatgccgagaccctggccgtcacctggcgc ggcaagaacatcggcgatgtgctgaccatggagatcgacgaggccgtcgagttcttcgcg gccatgaccagcatcgcccacccgctgcagctgatgaaggacgtgggcctgggctacctg acgcttggccagccgtcgccgacgctgtccggcggcgaggcgcagcgcatcaagctggtg accgagctgtccaaggtgcgcgacgacatcacgcgccgcgggcagaaggcgccgcacacg ctgtacgtgctggacgagcccaccgtcggcctgcatatggcggacgtggcgcgcctgatc cgcgtgctgcaccgtcttgccgacggcggccacagcgtggtggtgatcgagcacgacctc gacgtgatcgccgaggccgactggatcctggacctgggaccggagggcggcgcggcgggc ggcaccatcgtcggcgcggccgcgccggaggcgctggcgcggctgcaggccagccacacc ggcgcggcgctggtgccggtgctggcgcgccaggcgccggcggcggcacgggaggcgcgc gaagcgtag

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