Cupriavidus sp. USMAA2-4: BKK79_32935
Help
Entry
BKK79_32935 CDS
T05072
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BKK79_32935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuu03021
]
BKK79_32935
Transcription machinery [BR:
cuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BKK79_32935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Sigma70_r4_2
Osteopontin
GerE
Motif
Other DBs
NCBI-ProteinID:
AOY96388
LinkDB
All DBs
Position
2:complement(2970920..2972881)
Genome browser
AA seq
653 aa
AA seq
DB search
MTSGAQRTAARTGQAGASKGLDGTGAGGTARPDPTLDAAERSLQLRALIQLGKQRGYLTH
ADISDHLQENFADTAAMEGIVATFAEMGVKIYEQTPDAETLLLSDNAVVVADDQADEEAE
VALSTVDSEFGRTTDPVRMYMREMSSATLLTRKQEVEIAKRIEDGLADMIHAISACPSTI
ATILDLSAKVSAEEMGIDDLVDGLSDESVAEAAVGAAVDSADTADSEERADDEDGDADDS
DDDDSSGQSAESDLRQLRDECLTRFGRVAEHFARMREDAGASAAASARDAVREELRAIRF
TARTIERLCADIQGMVDDVRVVERQVLQLLVERCGMPREDVIARFPGNETNLAWGKSLVA
DARPYSNAVARALPDLESYQQKLIDIQSRAALPLPELKAVNRRMLAAERQMRQAKHEMTQ
ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTR
AIADQARSIRVPVHMIEQINKLNRFAREIMQRTGKEADPAELAERMEMTEEKVRSILRIA
KEPISMETPVGEDGDTNLGDMIADSDTATPADAAMQASLREVVRELLDELSPREAKVLRM
RFGIDMATDYTLEEVGKQFDVTRERIRQIESKAMKKLRHPSRADQLITYLREN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcggcgcacaacgaacggcggccagaacaggacaggctggggccagcaagggc
ctcgatggaaccggcgcggggggcacggcacggcccgatcccacgctggatgccgctgaa
cgcagcctgcagttgcgcgcgctgatccagttgggcaagcagcgaggctacctcacccac
gccgatatcagcgaccacctccaggaaaacttcgccgacaccgcggcgatggagggcatc
gtagccaccttcgccgaaatgggcgtcaagatctacgagcagacccccgacgccgagacg
ctcctgctcagcgacaacgcggtggtcgtggccgatgaccaggccgacgaagaagccgag
gtcgcgctctcgacggtggactccgagttcggccgtacgaccgacccggtgcgcatgtac
atgcgcgagatgagctcggcgacgctgctgacgcgcaagcaggaagtcgagatcgccaag
cgcatcgaagacggcctggccgacatgatccatgcgatctcggcgtgtccctcgaccatc
gctaccatcctcgacctgtcggccaaggtgtccgccgaggaaatgggcatcgatgacctg
gtggatggcctgagcgacgaaagcgtggccgaggccgccgtgggtgccgccgtcgacagc
gccgacacggccgacagcgaggaacgcgccgacgatgaggacggggacgccgacgacagc
gacgacgacgacagctccggccagagcgcggagtccgacctgcgccagctgcgcgacgag
tgcctgacgcgcttcggccgtgttgccgagcacttcgcgcgcatgcgcgaggacgctggc
gccagcgcagccgcctcggcccgcgatgccgtgcgcgaagaactgcgggcgatccgcttc
accgcacgcaccatcgagcggctgtgcgccgacatccagggcatggtcgacgacgtgcgc
gtggtcgagcgccaggtgctccagttgctggtcgagcgctgcggcatgccgcgcgaagat
gtcatcgcccgcttccccggcaatgagaccaatcttgcctggggcaagtcgctggtcgcc
gacgcgcgcccgtacagcaacgccgtggcgcgcgcgctgcctgacctggagtcgtaccag
cagaagctgatcgacatccagtcccgcgccgccctgccgctgcccgagctgaaggccgtc
aaccgcaggatgctggccgccgagcggcagatgcgccaggccaagcacgagatgacccag
gccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgtggcctgcagttc
ctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtggacaagttcgagtac
cgccgcggctggaaattctccacctacgcgacctggtgggtgcggcaggccgtcacgcgc
gccatcgccgaccaggcccgctcgatccgcgtgccggtgcacatgatcgagcagatcaac
aagctcaaccgcttcgcgcgggagatcatgcagcgcaccggcaaggaagccgatccggcg
gaactggccgagcgcatggaaatgaccgaggagaaggtccgctcgatcctgcgcatcgcc
aaggaaccgatctcgatggagacgccggtcggcgaggatggcgacaccaacctcggcgac
atgatcgccgactcggacacggccacgccggccgatgccgccatgcaggccagcctgcgc
gaagtggtgcgggaactgctcgatgagctctcgccgcgcgaggccaaggtactgcgcatg
cgcttcggcatcgacatggcgaccgactacacgctggaagaagtcggcaagcagttcgac
gtcacccgcgagcgcatccggcagatcgaaagcaaggcgatgaagaagctgcgccacccc
agccgcgcagaccagctgatcacctatctgcgggaaaattga
DBGET
integrated database retrieval system
