Cupriavidus sp. USMAA2-4: BKK79_33020
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Entry
BKK79_33020 CDS
T05072
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cuu03016
]
BKK79_33020
Enzymes [BR:
cuu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BKK79_33020
Transfer RNA biogenesis [BR:
cuu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BKK79_33020
Prokaryotic type
tRNA splicing ligases
BKK79_33020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AOY96402
LinkDB
All DBs
Position
2:2990786..2992009
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AA seq
407 aa
AA seq
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MSAIDYQLMELAHGKPVKMWTNGVAVEDDARRQLRNTASMPFVFRHLAVMPDVHLGKGST
IGSVIPTQGAIIPAAVGVDIGCGMMAVRTTLKAADLPDSLAALRRAIERAVPHGRAPGRR
DPGAWGERAPHHVDEVWKTLAPGFDQIRQKYPKLEKTNNYVHLGTLGTGNHFIEVCLDEA
GSVWFMLHSGSRGVGNAIGSLFIELAQQDMRQHIANLPDRDLAYFEEGSRHFDDYVEAVG
WAQEYARRNREVMMAAVIAAARGVIGKPFSVDEHAVNCHHNYVQRERHFDTDVYVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTVADQVKAT
AHVECRKDEAVIDEIPMAYKDIDAVMAAQRSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaatcgactatcaactgatggaactggcgcacggtaagccagtgaagatgtgg
acgaacggcgtggccgtcgaagacgacgcccgccgccaactgcgcaataccgccagcatg
ccgttcgtgtttcgccatctggcggtgatgccggacgttcacctgggcaagggctcgacg
atcggttctgtgattcccacgcagggggccattattccggccgcggtcggcgtcgatatc
ggctgcggcatgatggccgtgcgcacgacgctgaaggcagccgatctgcccgattcgctg
gcggcgctgcgccgcgcgatcgagcgcgccgtaccacacggccgcgcaccgggccgacgc
gatcccggcgcgtggggagagcgtgcgccgcaccacgtggacgaggtgtggaagacgttg
gctccgggcttcgaccagattcgccagaagtatccgaagctggagaagaccaacaactac
gtccacctgggtacgctcggtaccggcaatcatttcatcgaggtctgcctggacgaagcc
ggcagtgtctggttcatgttgcatagcggctcgcgaggcgtgggcaatgccattggttca
ctgttcatcgagctggcgcagcaggacatgcgccagcacatcgcgaacctgcccgaccgc
gatctggcctacttcgaggagggaagccggcacttcgatgactatgtcgaggcggtcggc
tgggcgcaggagtacgcccgccgcaatcgcgaggtgatgatggcggccgtgatcgccgcc
gcgcgcggggtgatcggcaagccgttcagcgtcgacgagcacgcggtgaactgccatcac
aactacgtgcaaagggagcgccacttcgacaccgatgtgtacgtgacccgcaagggcgcc
gtatcagcgcaaaagggacaactcggaatcattccggggtcgatgggagcgaagagcttc
atcgtgcgcggcctgggtaatccggagagcttttgctcatgcagccacggcgcgggacgc
acgatgagccgcaccgaagccaagcgccgctttacggtggcggatcaggtgaaagccacc
gcgcatgtggagtgccgcaaggacgaagccgtgatcgacgagatcccgatggcatacaag
gacatcgatgcggtcatggcagcgcaacgcagcctggtcgaaatcgtccacacgctacgc
caggtggtgtgcgtgaaggggtag
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