Corynebacterium uberis: LH390_03745
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Entry
LH390_03745 CDS
T08128
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cuw
Corynebacterium uberis
Pathway
cuw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH390_03745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuw03400
]
LH390_03745 (mfd)
Enzymes [BR:
cuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH390_03745 (mfd)
DNA repair and recombination proteins [BR:
cuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LH390_03745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UDL85754
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All DBs
Position
807892..811542
Genome browser
AA seq
1216 aa
AA seq
DB search
MLAGLLKVAATDPKLKGLVTHVGEPTLHLTGIDQARSWALGTLSHHAPVLVVTATGREAE
DLTAELRAMIGDKVAWFPSWETLPHERLSPGVDIVGRRAEVLGNLEKYSVVVTAARGVCQ
PVIAQVAGRDPVVLREGQDHPLEEVTEQLVFRAYERVDMVARRGQFAVRGGILDVFPTTA
AYPVRVEFWGDEVTEIRQFSVADQRTITDVDPISQVAAYPARELPITPQVAARAEELARR
HPGNPTLVELLSKLAAGTPADGMEALIPALIDAPLVTLPQLMDPATHVVLVAPEKIRRRI
TDLIATDQEFLEAGWEAAAMGADGPLAVEGLDLSASTYRSLDELEDDARDRRLPWWTFSP
PGMLEGAESDTLPLEFEPGPTPRGDLPAIEEMMALLLAHTNSGGRAAFITPTHGAVKRMV
DRFGEKGIRVHVAEPGWQPNPGEVTIYQALSHAGLVFPKVRKHRDAQALPLVVVTETDLT
GNRVGDIAGAKRRPARRRNRVDPLALKQGDFVVHETHGIGRFLKMAERTIQAGDETSRRE
YIVLEYAASKRGQPADQLWVPMDSLDMLSKYSGGEAPTLSKMGGSDWKNTKRKARAAVRE
IAGELVQLYAKRQSAPGHAFAPDSPWQREMEDNFPYVETEDQMAAIDAVKEDMEKPTPMD
RVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHLATFEERMAGFPVTIRGL
SRFTSTRESKEILRGLADGSVDIVVGTHRLLQTGVNWKNLGLIVVDEEQRFGVEHKEHIK
ALRSHVDVLTMSATPIPRTLEMSMSGIREMSTILTPPEDRHPVLTYVGPQEEQQVAAAIR
RELLRDGQTFVIHNRVRDIDKRARELRDLVPEARIVVAHGQMSEEILERTVQGFWDRDFD
VLVCTTIVETGLDIANANTLIVEGAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGTTLT
ENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYMRLVGEAV
DTFRALARGEVLDATDSGPREVRIDLPVDAHIPESYINSERLRLEVYRKLAAAGDETDLQ
LAVEEMEDRYGPIPVEVTRLLAVARLRNQARAAGVTDIGVQGTRIKVHPVALPDSKQVRL
KRLYPGSNYRAAAQAIQLNFPKAGRNVTDPKLRDEDLLQWAADFLTALLDAPATTVRGPH
ATPAHKGGPAVVSVSE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcggggctgctcaaggttgcggcgacggaccccaagctcaagggcttggtcacg
cacgtcggggagccgacgctgcacctgaccggcattgatcaggcgcgctcgtgggcgctg
ggcacgctcagccaccacgccccggtgctggtggtcacggcgacggggcgggaggcagaa
gacctcaccgcggagctgcgtgccatgatcggggacaaggtggcgtggtttccgtcctgg
gagacgctgccgcatgagcggctgagccccggggtggatattgtgggccggcgcgcggag
gtgctgggcaacctggagaaatattctgtggtggtcacagcagcgcgcggcgtgtgccag
ccggtgattgcgcaggttgccggccgcgatccggtggtgctgcgggagggccaggaccac
ccgctcgaggaggtcaccgagcagctggttttccgcgcctatgagcgggtggacatggtt
gctcgccggggccagtttgcggtgcgcggcggcatcctggatgtgtttcctaccacggcc
gcctacccggtgcgcgtggagttttggggcgatgaggtcacggagatccgccagttttcc
gtggctgaccagcgcacgatcacagatgtggacccgatttcgcaggttgcggcctacccc
gcgcgcgagctgcccatcaccccgcaggtggcggcgcgtgccgaggagctggcgcgccgt
cacccgggcaacccgacgctggtggagctgctgtccaagctcgccgcgggcactccagcc
gacggtatggaggcgctcatcccggcgcttatcgacgcccccctggtcaccctcccacag
ctcatggaccccgccacccacgtggtgctggtggccccggaaaagattcgccgccgcatc
acggacctgattgccaccgaccaggaattcctagaggccgggtgggaggccgcagcgatg
ggtgccgatggccccctggccgtggagggcctggacctgtccgcctccacgtaccggtcc
ctcgatgagcttgaagatgacgcccgcgaccgcaggctaccgtggtggaccttttccccg
ccagggatgctcgagggcgcggaatctgacaccctgccgctggagtttgagcccggcccc
accccgcgcggcgacctgccggccatcgaggaaatgatggcgctgctgctcgcccacacc
aattccggggggcgggcagcgtttatcacccccacccacggtgcggtcaaacgcatggtg
gaccgctttggggagaagggcatccgggtccacgtggcggagccgggctggcagcccaac
cccggcgaggtgaccatctaccaggcgctcagccacgccggactggtcttccccaaggtg
cgcaagcaccgggatgcccaggcgttgccgctggtcgtggtcacggagacggacctgacc
ggcaacagggtgggcgatatcgccggtgcaaagcgccggcctgcccggcgccgcaaccgg
gtggatccgctcgccctcaagcagggcgactttgtggtccatgagacccacggcatcggc
cgcttcctcaagatggccgaacgcacgattcaggccggggacgagacctcgcggcgcgag
tacatcgtgctggagtacgcggcgtcgaaacgcggacaacccgccgaccaactgtgggtg
cccatggactcgctggacatgctgagcaagtacagcggcggcgaggcgcccaccctgtcc
aagatgggcgggtccgattggaagaacaccaagcgcaaggcccgcgccgcggtgcgggag
atcgccggcgagctggtccagctctacgccaagcgccaatccgcgcccgggcacgccttc
gcgccggattcgccgtggcagcgcgagatggaagacaacttcccctacgtggaaacggaa
gaccaaatggcggccatcgatgccgtcaaggaggacatggaaaagcccacgcccatggac
cgggtcatcgtcggcgacgtgggctacggcaaaaccgaggtggccgtgcgcgccgcgttc
aaggcggtgcaggatggccgtcaagttgccgtgctcgtgcccaccacgctgctggcccag
caacacctggctacctttgaagagcgcatggcgggcttcccggtaaccatcaggggcctg
tcgcggtttacctccacgcgggaatccaaggagatcctgcgcgggcttgccgatggctcc
gtggacatcgtcgtaggcacccaccgcctgctgcaaaccggcgtgaactggaagaacctg
gggctcatcgtcgtcgatgaggagcagcgcttcggcgtagaacacaaggaacacatcaag
gcgctgcgcagccacgtcgacgtgctgaccatgtccgccacccccatcccgcgcaccctg
gagatgtccatgtccgggatccgggagatgtccaccatcctcaccccgccggaagaccgc
cacccggtgctcacctacgtgggaccgcaggaagaacaacaggttgccgcggcgattcgc
cgcgaactgctgcgcgacgggcagacgtttgtcatccacaaccgggtgcgtgacatcgat
aaacgcgcccgcgaactgcgcgacctcgtgcccgaagcccgcatcgtcgtcgcccacggg
caaatgagcgaagaaatcctcgaacgcaccgtccaaggcttctgggaccgcgacttcgac
gtcctagtgtgcaccaccatcgtggaaaccggcctggacatcgccaacgccaacacactg
atcgtggaaggcgcccaccacatggggctgtcccaactccaccagctgcgtggccgcgta
gggcgctcccgcgaacgcggctacgcctacttcctctaccccaagggcaccacactgacc
gaaaactcctacgaccggctagccaccatcgcccaaaacaacgacctcggcgccggcatg
gccgtagccatgaaagacctggaaatgcgcggcgccggcaacgtcctgggcgccgaacaa
tccggccacatcgccggtgtgggctttgacctctacatgcggctcgtcggcgaggccgta
gacaccttccgcgcactagcccgcggcgaggtcctcgacgccaccgactccgggccccgc
gaagtacgcatcgacctgcccgtggacgcccacatcccggagtcctacatcaactccgaa
cgcctccgcctggaggtctaccgcaaactcgccgccgctggcgatgagacggatctgcag
ctggcggtcgaagaaatggaagaccgctacggccccatccccgtcgaggtcacccgtctg
ctcgccgttgcccgcctgcgcaaccaggcgcgcgccgccggcgtgacggacatcggcgtc
caaggcacccgcatcaaggtccaccccgtcgcactgccggactccaagcaggtgcgcctc
aagcgcctgtacccgggctcaaactaccgggcagcggcgcaggccatccagctgaacttc
cccaaggccggacgcaacgtcaccgacccgaagctgcgtgacgaggacctcctccaatgg
gccgccgacttcctcaccgcgcttctcgacgcccccgccaccaccgtccgcggcccccac
gccaccccggcccacaagggtggccccgcggtggtttctgtgtccgagtaa
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