Corynebacterium uberis: LH390_04440
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Entry
LH390_04440 CDS
T08128
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cuw
Corynebacterium uberis
Pathway
cuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH390_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuw03019
]
LH390_04440
03009 Ribosome biogenesis [BR:
cuw03009
]
LH390_04440
Enzymes [BR:
cuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH390_04440
Messenger RNA biogenesis [BR:
cuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH390_04440
Ribosome biogenesis [BR:
cuw03009
]
Prokaryotic type
rRNA helicases
LH390_04440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UDL85461
LinkDB
All DBs
Position
958168..960273
Genome browser
AA seq
701 aa
AA seq
DB search
MTNTDNGYEPENVDAVSTDRTEVPQVEQAVETSEDQAQTAATTETVNPSESQEQSHEGAQ
PTRDDSTAEKTDSSERDTPNFEGLGLPDDVLKAVYKVGFETPSAIQAETIPLLMQDRDVV
GLAQTGTGKTAAFALPILARIDVAERSPQALVLAPTRELALQVADSFQSFADHLGGIHVL
PIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISGLRFLVLDEADEMLNMGFQ
EDVERILEDTPDDKQVALFSATMPSGIRRISKQYLNDPAEVTVKSKTRTNTNITQRWLHV
AHRNKLDALTRILEVTEFEAMIVFVRTKNETEEVAEKLRARGFSAAAINGDIAQQQRERT
VDQLRDGRLDILVATDVAARGLDVERISHVFNFDIPNDTESYVHRIGRTGRAGRTGEAIL
FVTPRERRMLRSIERATNAPLTEMDLPTVDEVNDSRKAKFADSITQSLEDSQLELFRGLV
KAYAEAHDTPLEDIAAALATQAQAGDEFLMKEQPRESRRDRFDRRDRDRDDRFDRGGRGR
RDRDRDRDRGGRSRFEAEPGKAMYRLAVGKRQHVRPGAIVGALANEGGLNSKDFGRISIF
GDHSLVELPQGLPREVLDRLADTRISGQLINIELDSGRPPRRESRGYGYGRDRDDRGDRG
GRGYGRRDDRGDRGDRGGYRGDRGDRGDRGGKRGGFHRDRY
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatacggataacggctacgagccggagaacgtggacgccgtgagcactgaccgc
accgaggtcccccaggtcgaacaggccgtggagacgagcgaagatcaggcgcagacggct
gccaccacagagacagtgaatccgtcggaatctcaggaacagtcgcatgagggcgcccag
cccactagggacgattcgactgctgagaagaccgactctagtgaacgggacacccccaat
tttgaggggcttggacttcctgatgacgtgctcaaggccgtctataaggttggatttgag
accccttcagcaattcaggctgagaccatcccgctgctcatgcaggaccgggatgtggtg
ggcctagcccagaccggtaccggcaagacggcggcattcgcgctgcccattcttgcgcgt
atcgacgtcgccgagcgttccccgcaggcgcttgtgctggcccccacccgcgagctcgca
cttcaggttgcggactcgttccaatccttcgccgatcacctcggcggcatccatgtgctt
cccatctacggcgggcaggcctacggcattcagttatccgggctgcgccgcggcgcccag
atcatcgtgggcaccccgggacgcgtcatcgatcacctggagaagggctcgctggacatc
tccggcctgcgcttcctggttctcgatgaagccgatgagatgctcaacatgggcttccag
gaagacgttgagcgcatcctggaagacaccccggatgacaagcaggtggcgctgttttcc
gcgacgatgcccagcggcatccggcggatttccaagcagtacctcaacgacccggcggaa
gtgaccgtcaagtcgaagacccggaccaacaccaacatcacgcagcgctggctgcacgtg
gcacaccgcaacaagctcgacgccttgacccgcatccttgaggtcaccgagtttgaagcc
atgatcgtgttcgtgcgcaccaagaatgagaccgaagaggtggcagaaaagctgcgcgcc
cgcggtttctccgctgccgccattaacggcgacatcgcccagcagcagcgcgagcgcacc
gtcgatcagcttcgcgacggccgcctggacatcctggtggccaccgacgttgcggcccgc
gggctcgacgtcgaacgcatcagccacgtgttcaactttgacattcccaacgacaccgag
tcctacgtgcaccgcatcggccggacgggccgcgccgggcgcaccggcgaggcgatcctg
tttgtcaccccgcgtgagcgccggatgctgcgctccatcgagcgtgccaccaacgccccg
ctcacggagatggatctgcccactgtcgacgaggtcaatgactcgcgcaaggcaaagttc
gcggactccatcacgcagtcccttgaggacagccaactggagctcttccgcggcctggtc
aaggcctacgcagaggctcacgacaccccgctggaggacatcgccgcagcactggccacc
caggcccaggccggcgatgagttcctgatgaaggagcagccccgcgagtcgcgcagggat
cgctttgaccgccgcgaccgggaccgcgacgaccgcttcgatcgcggcggccgtggtcgc
cgcgaccgggatcgggaccgcgaccggggcggccggagtcgcttcgaggcggagcccggc
aaggccatgtaccggctggccgtgggtaagcgccagcacgtgcgcccgggcgccattgtt
ggcgccctggccaacgagggcgggctgaactccaaggacttcgggcgcatctccatcttc
ggggaccactcgctggtggagctgccccagggcctgccgcgcgaggtgctcgatcggctg
gcggatacccgcatctccgggcaactgatcaatattgagctggattccggccgcccgccg
cggcgcgagtcccgcggctacggctacggccgcgaccgtgatgatcgcggcgaccggggc
ggacgcggctatgggcggcgcgatgatcgcggcgaccgtggggatcgcggcggctaccgt
ggggaccgtggcgatcgaggcgatcgtggcgggaaacgcggtggcttccaccgcgaccgc
tactaa
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