Corynebacterium uberis: LH390_06650
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Entry
LH390_06650 CDS
T08128
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cuw
Corynebacterium uberis
Brite
KEGG Orthology (KO) [BR:
cuw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuw03019
]
LH390_06650 (hrpA)
Enzymes [BR:
cuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LH390_06650 (hrpA)
Messenger RNA biogenesis [BR:
cuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LH390_06650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
NACHT
TsaE
HA2_N
ABC_tran
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UDL83799
LinkDB
All DBs
Position
1430934..1434845
Genome browser
AA seq
1303 aa
AA seq
DB search
MTSPSAPSRSDLESLLQEVSLIDARSLQRRLRKARTPQALTAIAKDIDRARSLVAARDGA
IGEISYPDELPVSAYREEIADAIRDNQVVIIAGETGSGKTTQIPKICLELGRGRRGLIGH
TQPRRLAARTVAERIAHELGQPVGQTVGYAIRFDDTVARRTAVKLMTDGILLAEMQHDRF
FNAYDTIIIDEAHERSLNIDFLLGYIKKLLPQRPDLKVIITSATIDPERFAHHFCSADGT
PAPIIEVSGRTYPVEVRYRPLEEERNGKTYAVDPLDGLTAALEELMKEGPGDILCFFPSE
RDIRDAMEVIGAKKWRGVEVTPLFGRLSNQEQHRVFSPHRGRRIVLATNIAETSLTVPGI
HYVIDTGTARISRYSTRTKVQRLPIEEISQASANQRSGRCGRIAEGIAIRLYSEEDFLSR
PEFTDPEILRTNLASVILRMASLRLGAVEDFPFVEAPEPRAVRDGISLLLELGAITQRPS
NGLPRLTAIGRDLARIPVDPRLARMLVEAHRLGCLAPTIVIVAALSLQDIRERPLDYQAQ
ADQLHARFKDKHSDFLSYLKLWEYLSTQRAELSGNAYRKKLKKEFLHFMRSREWQDLVRQ
LRDVCKQLSWQMGAEDTSQTHPDLLHRALLSGLLMNIGARDGNKKEYRGTRGSRFAIFPG
SSLAKRPPEFVMAAELVETSRLWARDVAEIDPSWVEKLGGDAVKYQYSEPFWSRSQSAVL
VHRSATYYGVPIIFDRTIGYQKVDPEAARDLFIRHALVDGDWDAHHKFLEHNAQALDQAS
RVEDKARRRGIIADEDALTEFYDARIPQTITTAAAFNTWWKKQRHRNAELLNFDPQALIA
PSETGVDEHQFPDSWPYGDSALDLRYVFSPGDPADGVSVLIPVPMLADVSESEFHWLVPG
MREELVTELLRTLPKGLRRSVVPVPDFAARITPLLDVNQPDITVALANALREAGVAGIDA
TDFRPAAVPPHLRMTYAAVDKAGKIIDSDKDLSALRQRQARHIASSVHKLSTATTEASAS
EWTADTLGTIAQEVTTDVDGHPVTAYPALVVSGDSVAVRVMPTRAAADAAMLTATLTLLL
QRTKLSAPQMVKGLPLQQRVSVENYPHGGASGLVEEVRVGAVRDALVRHGGPVRDPDAFA
ALAKTVIPEVAPQVRRDIVTLAPALAQYHKLTAELEQWEGPAIDDMNRQLEFLLPPKAVI
VHGMGHLKHLSRYLTAMEIRLQDMASNPDRDAQRQDEIADVEQALDQVLARKTPATAKTT
AVKDIRWMIQELRVSLFAQRLGTARPVSRKRVLNAIDKVARHR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaccttctgccccgtcgcgttctgatcttgaatccctgcttcaggaagtctcg
cttatcgacgcccgctcgctgcaacgtcgactgcgcaaagcccgcaccccgcaggcactc
acggccatcgccaaggacatcgaccgcgcccgcagccttgtcgcggctcgcgacggcgcg
atcggggagatctcctaccctgatgagcttcccgttagcgcctaccgggaggagattgcg
gacgctatccgggacaaccaggtggtgatcatcgccggggaaaccggctccggaaagacg
acgcagattcccaagatttgcttggaattgggccgcggcagacggggcctcatcgggcat
acgcaaccgcggcgccttgctgcgcgcactgttgccgagcgtattgcccacgagctcggg
cagcccgtcgggcagaccgtgggctatgccattcgcttcgatgacacggtggcgcgccgc
acagcagtcaaactgatgacggacggtatcttgctcgccgagatgcaacacgatcgcttc
ttcaacgcgtatgacaccatcattatcgatgaagcccacgagcgcagcctgaacatcgat
ttcctcctggggtacatcaaaaagctcctcccccaacgccccgacctgaaggttattatc
acttcagccaccattgacccggagcgttttgcccaccatttctgttccgccgacggaacc
cctgcacccatcatcgaagtgtcggggcgtacctatcccgtggaagtgcgttatcgcccc
ttggaggaggaacgcaacgggaaaacctatgcagttgatcccctcgatggactgaccgct
gccctcgaagaactcatgaaggaaggcccaggagatatcctgtgcttctttcctagcgag
cgcgatatccgcgacgccatggaggtcatcggtgcgaaaaaatggcgcggtgtagaggtc
acaccgctttttggccgactatcaaatcaagaacagcaccgggtgttttctccccaccgc
ggtcgcaggattgttcttgccaccaatatcgcggagacctccttgacggttccgggtatc
cattacgtcattgacacaggaacagcccgtatctcccggtattccacgcgcaccaaggtg
caacgccttcccatcgaggagatctcgcaggcaagcgccaaccagcgatctgggcgctgc
ggccgcatcgcagaaggcattgccatccgactgtattccgaggaggattttctcagccgc
ccggagtttactgaccccgaaatcctgcggaccaatctggccagcgtgatcctgcgcatg
gcttctttgcgcctgggcgctgtcgaggactttcccttcgtcgaggctccagaaccacga
gctgtccgcgacggcatctccctgctgctcgaacttggtgctatcacccagcgcccctcc
aacggtttgccgcggctaacggccattgggcgggatctggcgcgcattcctgtcgaccct
cgactggctcgcatgcttgtcgaggcccatcgcctcggctgcctcgcccccaccatcgtc
atcgtcgccgccttgagcctgcaggacatccgtgaacgcccgctcgattaccaagcacag
gccgaccagctacacgctcgattcaaagacaagcactctgactttttgagctacctcaag
ctgtgggaatacctgtcaacacagcgcgccgagctctccggaaacgcctatcgcaaaaag
ctgaagaaagagttcttgcacttcatgcgctcacgcgagtggcaggatctggtgcgccag
ctgcgggatgtgtgcaagcagctgtcctggcaaatgggtgcagaggatacctcccagacc
catccggatttgctccaccgcgcgctactgtccgggctcctcatgaatatcggtgcccgc
gatggcaacaaaaaggaataccgcggcacccgcggcagccgctttgccatattccccggt
tccagcttggctaaacgcccacccgagtttgtcatggccgcggagctggtggagacgtcc
cggctgtgggccagagatgtggcagaaattgacccttcgtgggtggaaaagctgggcggc
gatgccgtcaaatatcaatattctgaacctttttggtcccgctcccaatcggcggtgttg
gtccatcggtccgcgacctattatggcgtgcccatcatctttgaccgcactatcgggtat
cagaaggttgatcctgaggcggcccgggatctgttcatccgccacgcgctcgtcgatggt
gactgggatgctcaccataagttcctggagcacaatgcccaggcactggaccaggcctcg
cgtgtggaagataaggcgcggcgccgaggaatcattgcagacgaggacgcgctgaccgag
ttttatgatgcccgcattccccagacgattaccaccgcagctgccttcaacacgtggtgg
aagaagcaacgccaccgcaatgcggagttgttgaactttgacccgcaggccctcatagct
ccctcagaaaccggggtcgatgagcaccagttccccgattcctggccctatggggactcg
gcgctggatctgcgctacgtgttttctcctggggatcccgccgacggcgtaagcgtactc
attccagttcctatgctcgccgatgtctccgaaagcgagtttcactggctcgttcctgga
atgcgtgaggaactggtcaccgaactgctgcgcaccttgcccaaggggctgcgccgttcc
gtcgttcccgtccccgattttgctgcccgcatcaccccgcttcttgatgtcaaccagcca
gacatcaccgtggccctggccaacgcactgcgcgaagccggggtggcgggaatcgacgct
accgacttccgccctgcagccgtgcccccgcacttgcgcatgacctatgcggcggtggac
aaggccggcaagatcattgactctgacaaggacctaagcgccttaaggcaacgccaggcc
cgccacattgcgtcctcggtgcacaagctgagtaccgcgaccacggaggcgtcggcaagc
gaatggacagcggacacgctgggcactattgcccaggaggtgaccacggacgtcgatggc
cacccggtgactgcttatccggcgctggtggtgtcgggcgatagcgtggccgtgcgggtg
atgcctacccgcgcggctgccgacgccgcgatgctcaccgcgacgctgaccctcttgctc
cagcgcacaaagctgtccgcgccgcagatggtcaagggcctaccgctgcaacaacgagtc
agcgtggaaaactatccgcatggtggggccagcggcttggtcgaggaagttcgggtgggt
gctgtgcgcgacgccctggtacgccacggcggcccggtgcgcgaccccgacgctttcgct
gccctggctaaaactgtgatccccgaggtggcgccgcaggtcaggcgcgacatcgtcacg
ctggcaccggcgctggcgcagtatcacaagctgactgcggagttggagcaatgggagggg
ccggccatcgacgacatgaaccggcagctggagtttctccttccgcccaaggcagtcatt
gtccacggcatgggacatttgaagcatctgtccaggtacctcaccgcgatggagattcgg
ctccaagatatggccagcaaccctgaccgtgacgcccaacgtcaggatgaaatcgccgac
gttgagcaagcgctcgatcaggtgttggcgcgtaaaacccccgcgacggcgaagaccacg
gcggttaaggatattcgctggatgatccaggagctgcgggtgagcctttttgcccagcgg
ctgggtacagccaggccggtgtcgcgcaaacgggtgctcaacgccatcgacaaggtggca
cggcaccgctaa
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