Campylobacter upsaliensis: CUP3940_0246
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Entry
CUP3940_0246 CDS
T06758
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cux
Campylobacter upsaliensis
Pathway
cux03410
Base excision repair
cux03430
Mismatch repair
cux03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CUP3940_0246 (recJ)
03430 Mismatch repair
CUP3940_0246 (recJ)
03440 Homologous recombination
CUP3940_0246 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cux03400
]
CUP3940_0246 (recJ)
DNA repair and recombination proteins [BR:
cux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CUP3940_0246 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CUP3940_0246 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CUP3940_0246 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QKF87228
LinkDB
All DBs
Position
complement(238637..240223)
Genome browser
AA seq
528 aa
AA seq
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MHTITKKELRQILASRFENDLHKKLCELPLPSCLKDIYKAANRIKEAIEKNEKVAIVGDY
DVDGIISCVILSEFFDDIGFDYSVKIPNRFKDGYGLNEEIINELEDIKVIITVDNGIAAL
EAAKLCKERGIDLIITDHHTPLQTLPEAYAIINPKQKECNFPNIEICGAQVAWYLIAALK
EVCKLKYDMCKFLELLAIAIIADMMELRDLNRACVRRGIECINKSKRAAFRAMKQYYQKD
KFAIDNIGFLIAPLINSAGRMNDASVSYKFLHTKDLNKAMHYLEQIISFNESRKDEEKQL
FEESLRQIDEKQSCVIVGGEEWHEGVLGIVASRLAKHFKKPSFVFSINEDKLKGSARSVG
KIDILNLISKANPYLKNYGGHKGAAGLSLELKDYENFKNLIQKESALIDKEEFLDTEEVL
GVLEPSEIDFEMLEILESFEPFGYKNPRPYFVLENLKVKNKKLLGKEKKHLKLILVKDNK
TIEALFFNFDKEPNLEESINLVGSISKNEFRGLVTPQFIIQELYSLSS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcataccataactaaaaaagaattgaggcaaattttagcttcacgctttgaaaatgac
ctacataaaaagctttgtgaattaccattacctagctgtttaaaagatatttataaggcg
gcaaatcgcattaaagaagccattgagaaaaatgaaaaagtcgccattgtgggtgattat
gatgtcgatggaatcatttcttgcgtgattttaagcgaattttttgatgatataggtttt
gattatagtgtgaaaattcctaatcgctttaaagacggctacggcttaaatgaagagatt
attaacgagcttgaagacattaaggttatcatcacggtggataatggcatagccgcactt
gaggcggcgaagctttgcaaagaaagagggattgacctcatcatcacagatcatcacaca
cccctacaaaccctgcccgaagcttatgctatcattaatcccaaacaaaaagagtgtaat
ttcccaaacattgaaatttgtggagcacaggtagcttggtacttaatcgcagccttaaaa
gaagtatgtaaattaaaatacgatatgtgtaaatttttagagcttttagccatagctatc
atcgccgatatgatggagcttagggacttaaatagggcttgtgtaagaagaggaatagag
tgtattaataaatccaaaagagcggcttttagagcgatgaagcaatattatcaaaaagat
aaatttgccattgataacataggctttttaatcgctcctttgattaatagtgcggggaga
atgaacgatgctagcgtttcttataaatttttacacactaaagacttaaataaagcaatg
cattatttagagcaaatcattagctttaatgaaagccgtaaagatgaagaaaaacagctt
tttgaagagagcttaagacaaattgacgaaaagcaatcttgcgtcattgtgggtggagaa
gagtggcacgaaggtgtgcttggcatagtggcaagtcgcttggcaaagcattttaaaaag
ccctcttttgtcttttctatcaatgaggataaactaaaaggtagtgctagaagtgtcggt
aagatagatattttaaatttaatttctaaagcaaatccctatcttaaaaactatggtggt
cataaaggggcggcgggacttagcttagagcttaaggactatgaaaattttaaaaatttg
attcaaaaagaaagtgctttaattgataaggaagaatttttagatacagaagaagtttta
ggggtgctagagcctagtgagattgattttgaaatgcttgaaattttagaaagttttgag
ccttttgggtataaaaatcctcgtccttatttcgtgctagaaaatttaaaggtcaaaaat
aaaaaattactcggcaaagaaaaaaagcatttaaagcttatcttagtcaaagataataaa
accatagaggcactttttttcaattttgacaaagagccaaatttagaagagagtatcaat
cttgtaggtagcatttctaaaaatgaatttagaggacttgtaacgcctcaatttatcata
caagagctttattcactctcttcttaa
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