Campylobacter upsaliensis: CUP3940_0598
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Entry
CUP3940_0598 CDS
T06758
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cux
Campylobacter upsaliensis
Pathway
cux03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUP3940_0598 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cux03400
]
CUP3940_0598 (mfd)
Enzymes [BR:
cux01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUP3940_0598 (mfd)
DNA repair and recombination proteins [BR:
cux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUP3940_0598 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKF87566
LinkDB
All DBs
Position
597796..600720
Genome browser
AA seq
974 aa
AA seq
DB search
MQASFFEYLKKGNFCELLLCENEKEADLLAQVSAFFGIKTFVLPDFRAEFGDDLRAFSKE
LFELCKVLNAYHKENAQKILISPLASVLKKLPSKRHLQGFILDKTKPFNVELLKDEFLRL
GYEFVDMVQDKGELSLRGEVLDIFCINEENPVRILFFGEEIESIRYFDLDTQKSIPSELD
KLEICPFLSHFSKSAYEEFEEKLESFESKALIKDINSLGFWCVDDFEDYLKLDFKSIKKF
DASFENVDFINARILPEASVYRDLQSIYNQDFFALHHNKKITILAQNEALFKQLELDMSN
IIFKQSTLRLNVISSDEIILSLNKKDKKRQKRKANLILDELKIGDFIVHEDYGVGKFLGL
ELLNISGAKKEFVALSYQNNDKLLLPVENLYVIDKYLGVGGAIPLLDRLGKSTFIKLKER
LKTKLLALASQIIAMAAKRALIKPKELKIDFEAQADFVQRAGFSYTEDQVKACEDILEDF
KSSRVMDRLLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFEEF
DLKVFKLDRFTSAKEKKYLLEELKNNTPCVVVGTHALLSVECENVALVIIDEEHKFGVKQ
KEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSYSILQTPPEDRLDVRSFVRESEDALL
KEAILRELRRGGQIFYIHNHIASIKQCEKHLKSLFKDLRILILHSKIDAKTTEEEMLKFE
NKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSNKQGYCYFLVED
KANLSEVALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYLKM
LEDELNALSKNESVCENKLELKLNINAFLNPELINEDSLRLELYRRLSKCEDSSRLYEIE
AEIEDRFGKLDLYTKQFLALIRIKILASGKFKAISNYMQNIQLIKINDEKEVIKAKSKDE
DDILEAILVYLRKS
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtctttttttgaatatctcaaaaagggtaatttttgcgaattattactttgt
gaaaatgaaaaagaagcagacttacttgcccaagtaagtgccttttttgggataaaaact
ttcgttttgcccgattttagggcggaatttggcgatgacttacgcgctttttctaaagaa
ctttttgagctttgtaaggttttaaatgcctatcataaagaaaacgctcaaaaaattctc
atctcccctctagcaagtgttcttaaaaaacttccatcaaaaaggcatttgcaaggcttt
atattggataaaaccaagccttttaatgtggagcttttaaaagatgaatttttgcgtttg
ggttatgaatttgtcgatatggtgcaagataagggagagctttctttaaggggagaggtg
cttgatatcttttgcattaatgaagaaaatcctgtgcgaattttgttttttggtgaagag
attgaaagcattagatattttgatttagacacgcaaaaatctatcccaagtgagcttgac
aagcttgaaatttgcccatttttgagccatttttctaaaagtgcttatgaggaatttgag
gaaaagttggaaagctttgaaagtaaggctttaattaaggatattaattctttgggtttt
tggtgcgttgatgattttgaggattatttaaagcttgattttaaaagtattaaaaaattt
gacgcaagctttgaaaatgttgattttattaatgcaagaattttaccagaagctagtgtt
tatagggacttgcaaagtatttataatcaagatttttttgccttgcatcataataaaaaa
attactattttagcgcaaaatgaagccctttttaagcagcttgagcttgatatgtcaaat
attatttttaaacaaagcactttaaggcttaatgttattagtagtgatgagattatactt
tctttaaataaaaaagataaaaaaaggcaaaaacgcaaggcaaatttaattttagatgag
cttaaaattggtgattttatcgtgcatgaagattatggagtgggaaaatttttagggctt
gaattgctaaatatttcgggtgctaaaaaggaatttgtcgcactttcatatcaaaataat
gacaaattactcttacctgtggaaaatctttatgtgattgataaatatttgggtgttggg
ggtgcgatacccttacttgataggctaggaaaaagcacctttattaagcttaaagaaagg
cttaaaactaagcttttagcccttgcttcgcaaatcattgctatggcggcaaaaagggca
ctcattaaacctaaggagcttaaaatcgactttgaagcacaagcagatttcgtccaaagg
gcggggttttcttacacggaagaccaagttaaggcttgtgaggatattttggaagatttt
aaaagctctagggttatggataggcttttaagcggagatgtaggttttggcaaaacggaa
gtggcgatgaatgccatttttcctgtgttaaaaagtggctttagtgtcttttttttcgtg
ccaaccacgcttttatcgcaccagcattatcaaagtcttaaaaagcgttttgaggaattt
gaccttaaagtttttaagcttgatcgctttacaagtgctaaagaaaaaaaatatttgcta
gaagagcttaaaaataatacgccttgcgtagttgtcggtacacacgcgcttttgagcgtt
gagtgtgaaaatgtcgctttagtgattatcgatgaggagcataaatttggcgttaaacaa
aaagaaaaacttaaggaattttcgcaaaattcccatcttctttcaatgtctgctacgcct
ataccaaggagtttaaatcaagctttaagttccattaaatcttatagcattttacaaact
ccaccagaagataggcttgatgtaagaagttttgtaagggaaagcgaggacgcacttctt
aaagaggctattttaagagagcttagaaggggtgggcaaattttttatattcataatcat
attgcaagcattaagcagtgtgaaaaacacctaaaaagcctttttaaagacttaagaatt
ctcattttacattctaaaatagacgctaaaaccacagaagaagaaatgcttaaatttgaa
aataaggcttatgatttacttttatgcacatctatagtggagagcggaatagacctgccc
aatgtcaataccatcatcattgaaaaaagtgagcgttttggtatggcggatttacatcag
cttagaggaagagtcggcagaagtaataagcagggttattgttattttttagtagaggat
aaggcaaatttgagcgaggtggcgttaaaaaggcttgtttctttggagagcaattctttt
cttggggcgggttctttactggcttatcacgaccttgagataagaggaggtgggaatttg
ctagggcttgatcaaagtggacatattgagcaaattggttatagcctttatcttaaaatg
cttgaagatgagttaaatgccttaagtaaaaatgaaagtgtgtgtgaaaataagcttgaa
ttaaagcttaatatcaacgcttttttaaatcctgagcttattaacgaagatagcttaagg
ctagagctttatcgccgtcttagcaagtgcgaggatagctctaggctttatgagattgaa
gcggagattgaggatagatttggcaaattggatctttatactaagcaatttctagcactt
attcgcattaaaattctagcaagtgggaaatttaaggcgattagtaattatatgcaaaat
atccagcttattaaaataaatgatgaaaaagaagtcatcaaggctaaaagcaaagatgaa
gatgatattttagaggctattttggtatatttaagaaagtcttaa
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