Campylobacter upsaliensis: CUP3940_0894
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Entry
CUP3940_0894 CDS
T06758
Name
(GenBank) UvrD/REP family helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cux
Campylobacter upsaliensis
Pathway
cux03420
Nucleotide excision repair
cux03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUP3940_0894
03430 Mismatch repair
CUP3940_0894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cux03400
]
CUP3940_0894
Enzymes [BR:
cux01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUP3940_0894
DNA repair and recombination proteins [BR:
cux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CUP3940_0894
MMR (mismatch excision repair)
Other MMR factors
CUP3940_0894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
CarD_TRCF_RID
AAA_12
AAA_11
PcrA_UvrD_tudor
DEAD
Motif
Other DBs
NCBI-ProteinID:
QKF87848
LinkDB
All DBs
Position
complement(877256..879289)
Genome browser
AA seq
677 aa
AA seq
DB search
MKILQSLNESQKEAVRHIDGAMLILAGAGSGKTKTITTRLAYLIDEVGIPAQSTLTLTFT
NKAAMVMKTRALELIRDKEAMPLLCTFHKFGLMFLRLHIARLGRKNDFVVIDSDDVKKIL
KEIIGAEKDSVSFVMSEISRFKNMAFGVEDVFEEAKKLKKEGQEYEKAFKLATYYKNYQA
YLLKYNFVDFDDLLLLTCFLLEDEEFAKKQSLIYRYIMVDEYQDTNFLQHQILKSLCKSH
ENLCVVGDDDQSIYSWRGAKVENILNFQNEFENVKLVKLEQNYRSVGTILKAANELISHN
QKRLGKTLICTKDEGEEIEICACEDERDESIMVAKKIKSLLKQGVKADEIAVLFRVNALS
RALEEALMKEQIPYLLLSGMRFYERAEIKDLIAYLRLINNLEDDFSFKRIINRPKRGFGE
VALQKLENHALKHQISLFEALCNLEGSGAFSQKLQNELCDFVENIKSLRELSNLKDLIDG
LDEKFKFKDYYEKQNDGEDKIANINEFCASLKDRINNENIENLETILSEISLLSEQDKAN
DGICIMSVHTSKGLEFDYVFVIGLEMGFFPVGYDNIEEERRLAYVAFTRAKKRLCLSYVN
SRFHQGSRAYLQKSCFLEESGVLNEEMKMEEGFKKGDLVRHKIFGVGRIVGINKDKLSIN
FGGIERIILDSYVERAV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttgcaaagtctcaatgaaagccaaaaagaagcagtgaggcatatagacgga
gctatgcttattttagcaggggctggaagtggtaagactaagactatcacaacgcgtctt
gcttatcttatcgatgaggtgggaattccagcacaaagcaccctaacgcttacttttact
aataaggctgctatggtgatgaaaactagggctttggagctgattagagataaagaagct
atgcctttactttgcacctttcataaatttggattgatgtttttaagacttcacattgca
aggcttggtcgaaaaaatgattttgtagtcattgacagcgatgatgttaaaaaaattctt
aaagaaatcataggagcggaaaaggatagtgtaagttttgttatgagtgaaatttcacgc
tttaaaaatatggcttttggcgtagaagatgtttttgaagaagcgaaaaagctgaaaaaa
gaagggcaagaatatgagaaagcttttaagcttgcgacttattataaaaattatcaagct
tatcttttaaaatataattttgtcgattttgacgatttgcttttgctgacttgtttttta
cttgaagatgaggaatttgcaaaaaaacaaagcctaatttatcgctacattatggttgat
gagtatcaagatacgaattttttgcaacatcaaattctaaaaagtctttgtaaaagtcac
gaaaatctttgcgttgtgggtgatgatgatcaaagcatttatagctggaggggagctaag
gtcgaaaatatccttaattttcaaaatgaatttgaaaatgttaagttagtgaaattagag
caaaattaccgctcggtcggcactattttaaaagcggcaaatgagttaatctcacataat
caaaaaagactaggcaagactttaatttgcactaaagatgagggggaggagattgaaatt
tgtgcctgtgaagatgaaagagatgaaagtattatggtcgcaaaaaaaattaagtctctc
ttaaaacagggtgttaaagcggacgaaattgccgttttatttcgcgttaatgctctttct
cgtgctttggaagaagcattaatgaaagagcaaattccttatcttttattaagcggaatg
cgtttttatgaaagagcggagataaaagatttaatcgcctatcttagacttattaataat
ttagaagacgatttttccttcaaacgcattattaatagacctaaacgaggttttggagag
gtggcacttcaaaagctagaaaatcacgccttaaagcatcaaatttcactttttgaagcc
ttgtgtaatttggaagggagtggtgcttttagtcaaaaattgcaaaatgaattgtgtgat
tttgtagaaaatattaaaagcttaagagagctttcaaatttaaaagatttaatcgatggg
cttgatgaaaaatttaaatttaaggattattacgaaaaacaaaacgatggcgaggataaa
atagcaaatattaacgaattttgtgcgagtttaaaagatagaatcaataatgaaaatatt
gaaaatttagaaacgattttaagtgaaatttcacttttaagtgagcaagataaggcaaat
gatggcatttgcattatgagtgtgcatacaagcaagggcttggaatttgactatgttttt
gttataggcttagaaatgggctttttccctgtgggctatgataatatagaagaggagagg
cgtttggcttatgtagctttcactagagcaaaaaaaagattatgtttaagttatgtcaat
tcgcgttttcatcaaggaagtagagcgtatttacaaaaaagctgttttttggaagaaagt
ggagtgcttaatgaagaaatgaaaatggaggagggatttaaaaagggcgatttagtgcga
cataaaatttttggagtggggagaattgtggggattaataaagataaattaagcattaat
tttggtggtattgaaagaattatacttgattcttatgtcgaaagagcggtatga
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