Campylobacter upsaliensis: CUP3940_1011
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Entry
CUP3940_1011 CDS
T06758
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cux
Campylobacter upsaliensis
Pathway
cux03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cux00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUP3940_1011 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cux03019
]
CUP3940_1011 (pnp)
03016 Transfer RNA biogenesis [BR:
cux03016
]
CUP3940_1011 (pnp)
Enzymes [BR:
cux01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CUP3940_1011 (pnp)
Messenger RNA biogenesis [BR:
cux03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CUP3940_1011 (pnp)
Transfer RNA biogenesis [BR:
cux03016
]
Prokaryotic type
tRNA degradation factors
CUP3940_1011 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
S1_2
nSTAND_NTPase4
Motif
Other DBs
NCBI-ProteinID:
QKF87963
LinkDB
All DBs
Position
complement(993853..996063)
Genome browser
AA seq
736 aa
AA seq
DB search
MFNLFKNFKKLLSNDKGNIMQYSIQINQNLEIFDIDKVAKQAAGSVLMRVGKSVVLATVA
REDKQVEEDFLPLTVQYIEKAYAVGRIPGGYIKRETKPGDNETLTARIIDRSLRPLFPKG
YAYPTQIVVMVLSADDEVDLQVMSLNAASVALYLSGIPIKAPVCGVRIARINDEFVLNPS
NSKLKESTLDLYVAGVKDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVINELS
EDEILQALSVAKKAILNGSNAYEEAFFKHRKKEELELKEELENVELFEFIKQNYTNEVKF
AINQMAKSERASELEKIVKELMKLENIIDKYSQEDVFNALSKVKKELVRAQILKERKRAD
GRNLNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPISER
FMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVVRLVSEILESNGS
SSMATVCGGSLALRAAGVPSIKLVAGVAMGLVLEDNDYAILTDIMGLEDHDGDMDFKVAG
TKDGITALQMDIKLGGIDENILKNALYQAREARLHILDLMEEANSQIIINEEVLPKLELF
SVEPSKIVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNQSEQIKAAKDYIISITS
KGKKFSKDLTQFKVGEEFFEAEVKKVAPFGAFIALKDGVDGLLHSSKMKTKLSENDKVDV
KISEIKNGKISVDLLS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaatttatttaaaaattttaaaaaattattatcaaacgataaaggaaatataatg
caatacagcatacaaatcaatcaaaatttagaaatttttgacatcgataaggtcgctaaa
caggcagccggctctgttttaatgcgagtgggtaaaagtgtcgttttggcaacggtagca
agagaagataagcaagtagaagaagactttttgccccttaccgtgcaatacatcgaaaaa
gcttacgctgtgggacgcataccgggaggctatatcaaaagagaaactaagcccggagat
aacgaaacccttacggcaaggattattgataggagtttaagaccgctttttcctaagggt
tatgcttatcctacgcaaattgtagttatggttctttcagctgatgatgaggtcgatttg
caagtgatgagcttaaatgcggcaagcgtggctttgtatttgagtggaattcctattaaa
gcacctgtttgtggggtgagaatcgctaggattaatgatgagtttgtattaaatccaagc
aattctaaacttaaagaaagcacactagatctttatgtggctggggttaaagatgagctt
ttgatgatagaaatgagagctttgccaagcgagagtgagggtgaggctatggtggaaact
agctttgcggaggctttagctgggactagcatttatgagcaagtgataaatgagttaagc
gaagatgaaattttacaggctttaagtgtggctaaaaaggcgatactaaatggctcaaat
gcctatgaggaggcttttttcaaacatcgcaaaaaagaagaattagaattaaaagaagag
cttgaaaatgtagagctttttgaatttattaagcaaaattacacaaatgaagttaaattc
gccatcaatcaaatggcaaaaagtgaaagggcaagtgagttagaaaaaatcgttaaagaa
cttatgaagcttgaaaatatcatagataaatatagtcaagaagatgtttttaacgctctt
tctaaggtcaaaaaagagcttgtgagagcgcaaattttaaaagagagaaaaagagctgac
ggacgcaatttaaacgaggtaagagccatagaaattgaaacaaatattttaccaaacgca
cacggctcttgtcttttcacaagggggcaaacacaggctttagttgtagcgactttgggc
ggggaaaatgatgcgcaaatggtggatttactaagtgagaaaaatcctattagcgaacgc
tttatggttaattacaattttccaggcttttctgtgggcgaggcaagtcctattaaggcg
ccgggtagaagagagcttggacacggaaatttagctaaaagagcgctttatccaagtgtc
gatgaaaattatccttatgtggtgcgtttagtgagtgaaattttagaaagtaatggctct
agctctatggcaacggtatgcggaggatcattggctttaagggcggctggagtgcctagc
attaagcttgtggcaggtgtggctatgggacttgttttagaggataatgactatgctatt
ttgacagatattatggggcttgaggatcacgatggagatatggattttaaagtcgctgga
actaaggacggaattaccgctcttcaaatggatattaaattaggcggaattgatgagaat
attctcaaaaacgccctttatcaagcaagagaggctagacttcacattttagacttaatg
gaagaggcaaattcgcaaattattattaatgaggaggttttaccaaaattagagcttttt
agcgtagagcctagcaagattgttgatattataggacaagcgggtaagacgattaaagag
attattgaaaaatttggtgtttctattgaccttgaccgcgaaaagggtgaggttaaaatc
gcaggaaatcaaagtgagcaaatcaaagccgcaaaagattatatcatcagcattacaagc
aagggtaagaaattttctaaggatttaacgcaatttaaagtaggcgaggaatttttcgaa
gcagaagtgaaaaaagtagcaccttttggggctttcatcgctttaaaagacggggtcgat
ggcttacttcatagctccaaaatgaagactaaattgagtgaaaatgataaggttgatgta
aaaatcagtgagattaaaaacggcaaaatttcagtggatttactctcttag
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