Campylobacter upsaliensis: CUP3940_1234
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Entry
CUP3940_1234 CDS
T06758
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cux
Campylobacter upsaliensis
Pathway
cux02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cux00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CUP3940_1234 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cux03021
]
CUP3940_1234 (rpoD)
Transcription machinery [BR:
cux03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CUP3940_1234 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
LexA_DNA_bind
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QKF88178
LinkDB
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Position
1228019..1229872
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AA seq
617 aa
AA seq
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MDAKTQNLELEELFKENKEDYITYEKLVKYLNKQPNLTAIKKIRSLMKKYKVELYSAAQI
AQMQNVADAKRLEEEKQKLQDTGLENEFNLANENELLEWSRSDSPVRMYLREMGQIALLN
KDEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYQEPLINRERRVKELFKSFDEEEDKE
NDKLDEEENDEESEEDKKTKKPNKKEDERTLKVIEKFKALEKAKKEWLKVSKETKAKEDE
LLDKLSIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDDEFDKELKRLEYRLPMFS
DELKARHADILKEITKLSKDEIAEKAMETTMVSTYMEIKKLFQTKEASKKSFDLEKSRLK
EILEQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKF
EYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPD
VNDIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDNILKDD
LKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKL
KHPKVGRKLKNYIEGWK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggacgctaaaactcaaaatttagagcttgaagaattatttaaggaaaataaagaagat
tatattacctatgagaaattagttaaatatcttaataaacagcccaatcttacagcgatt
aaaaaaattcgctctttaatgaaaaaatataaagttgagctttattctgcggcacaaatt
gcccaaatgcaaaatgtagccgatgcaaaaagattagaagaagagaaacaaaagctccaa
gatactgggctagaaaatgaatttaatttagcaaatgaaaatgagcttttagagtggagt
cgctcggactctcctgtgcgtatgtatttaagagaaatggggcaaatcgcacttttaaac
aaagatgaagaagtcgaaatttcaaagaaaattgaattgggtgaagatattatcatcgat
gctttttgttctgtgccttatttgattgattttattttagactatcaagaacctttgatt
aatagagaaaggcgtgtaaaagagctttttaaaagttttgatgaagaagaagacaaagaa
aatgataagctcgatgaagaagaaaatgatgaagaaagcgaagaggataaaaaaaccaaa
aagcctaacaaaaaggaagatgaacgcaccttaaaagtgatagaaaaatttaaagcctta
gaaaaagcaaaaaaagaatggcttaaagtttctaaagaaactaaggctaaagaagatgaa
cttttagataaattaagcatagcttttaaaaagaatattttaaaagagaaattaatggac
ctaggaccaacttcaaagcttattagtgaaattgtcaagtcaatggaaacagcgcttaag
agcgatgatgaatttgacaaggaacttaagcgtttagaataccgtcttcctatgttttca
gatgagcttaaagctagacatgcggatattttaaaagaaattaccaaattaagcaaagat
gaaatcgccgaaaaagctatggaaacgactatggtaagcacttatatggagattaaaaaa
ctctttcaaactaaagaagcgagtaaaaaaagctttgatttggaaaaaagtcgtttaaaa
gaaattttagaacaaatcaaaagaggtaaaaaaatttccgatgaagctaagggtagaatg
gcaaagtcaaatttgcgtcttgttgtcagtatagccaagcgttatacaaatagaggctta
ccatttttagaccttatacaagaaggtaatataggcttaatgaaagcggtggataaattt
gaatacaagagaggttataaattttccacttatgcgacttggtggataagacaagccatt
tcaagagcgattgctgatcaggcaagaacaattcgtattcctatccatatgatagaaacc
atcaatcaaatcaacaaaattataagagagcatcttcaaaaaaatggcaaagagccagat
gtcaatgatattgctaaagaagtgggcttgagcgttgataaggtaaaacaagtcattaaa
attaccaaagagcctatttctcttgaagcacctattgggagtgaagatgatggaaaattt
ggagattttgtagaggatagaaattccctttcccctatggataatattttaaaagatgac
ttaaaagaacaaatcgatgaagtgcttgatcagctaaatgatagagaaaaggctgtaatt
cgtatgcgttttggcttacttgaagatgaaagtgatagaactttggaagagataggaaaa
gaacttaatgtaacgcgcgaaagagtaaggcaaatagaaagctcggcaattaaaaaacta
aagcacccaaaagtaggacgcaaacttaaaaactatatcgaagggtggaaataa
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