Curtobacterium sp. YC1: I8920_05295
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Entry
I8920_05295 CDS
T10236
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cuy Curtobacterium sp. YC1
Pathway
cuy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8920_05295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuy03019
]
I8920_05295
Messenger RNA biogenesis [BR:
cuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8920_05295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QQD77155
LinkDB
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Position
1102541..1104217
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AA seq
558 aa
AA seq
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MPTQVSTPQPLENGTLRVIPIGGLGEIGRNMTVYEYEGKLLIVDAGVLFPEEHQPGVDLI
LPDFAPIRDRLDDVLGVVLTHGHEDHIGAVPYLLKLRDDIPLIGSTLTLALVEAKLKEHR
IKPYTLVVAEDQTEQLGPFHLEFVAVNHSIPDALAVAITTPAGRVLHTGDFKMDQLPLDD
RITDLRAFARLGEQGVDLFLPDSTNADVPGFTAPERDIGPVLENIITRARKKVVVASFSS
HVHRVQQVLDAAAAANRKVAFMGRSMIRNMTIAADLGYLRVPENVLIDTKKAKNVPDDQI
VYMSTGSQGEPMAVLARMANMEHQIEIGEGDTVILASSLIPGNENAVYRVIDGLTKLGAK
VVHKGNAKVHVSGHASAGELLYCYNILRPKNVLPVHGEHRHLYASADLAIQTGVPPRNVI
LGQDGIVVDLKDGEVTVAGQLDIGYVYVDGSTVGEITDADLKDRRVLAEEGFISIFAAVD
FTTGQCVVGPEIQSRGFAEDDSVFDDVRPQIAKAIAEAAANGTRDAHAFGQVVRRTVGRW
VNTKHRRRPMIVPVVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccacacaagtctccacaccgcagccgctcgagaacggcaccctccgcgtgatcccc
atcgggggtctcggcgagatcggtcgcaacatgaccgtctacgagtacgagggcaagcta
ctcatcgtcgacgccggcgtgctgttccccgaggagcaccagccgggcgtcgacctgatc
ctgcccgacttcgcgccgatccgggaccgcctggacgacgtcctcggtgtcgtgctcacg
cacggccacgaggaccacatcggcgccgtcccgtacctgctcaagctccgcgacgacatc
ccgctcatcggctccacgctgaccctggccctcgtcgaggcgaagctcaaggaacaccgg
atcaagccgtacacgctcgtcgtggccgaggaccagaccgagcagctcggtccgttccac
ctcgagttcgtcgccgtgaaccactccataccggacgccctcgccgtcgcgatcacgacc
cccgccggtcgtgtcctgcacacgggtgacttcaagatggaccagctcccgctggacgac
cgcatcaccgacctccgcgccttcgcgcggctgggggagcagggcgtcgacctgttcctg
ccggactcgaccaacgccgacgtgccgggcttcaccgcgccggagcgcgacatcggtccg
gtgctcgagaacatcatcacgcgcgcccgcaagaaggtcgtcgtcgcgagcttctcgtcg
catgtgcaccgcgtgcagcaggtgctcgacgccgcagccgccgcgaaccgcaaggtcgcg
ttcatgggtcgctcgatgatccggaacatgacgatcgccgccgacctcgggtacctgcgg
gtgccggagaacgtgctcatcgacacgaagaaggcgaagaacgtccccgacgaccagatc
gtctacatgtcgaccgggtcgcagggcgagccgatggcggtcctggcgcgcatggcgaac
atggagcaccagatcgagatcggagagggcgacaccgtcatcctcgcctcgtcgctcatc
ccgggcaacgagaacgccgtctaccgcgtgatcgacgggctgaccaagctcggcgcgaag
gtcgtgcacaagggcaacgcgaaggtgcacgtctccgggcacgcctcggccggcgagctg
ctgtactgctacaacatcctgcggccgaagaacgtgctgccggtccacggcgagcaccgc
cacctgtacgcgagcgccgacctggcgatccagacgggtgtcccgccgcgcaacgtcatc
ctcgggcaggacggcatcgtcgtggacctgaaggacggcgaggtcacggtggccggccag
ctcgacatcgggtacgtctacgtggacggctcgaccgtcggcgagatcaccgacgccgac
ctgaaggaccgccgggtcctggccgaagagggcttcatctcgatcttcgccgcggtggac
ttcaccaccggacagtgcgtggtcgggccggagatccagtcgcgcggcttcgccgaggac
gactcggtcttcgacgacgtccgtccgcagatcgccaaggcgatcgccgaggcggccgcc
aacggcacccgcgacgcgcacgccttcggtcaggtcgtccgtcgcacggtcggccgctgg
gtgaacacgaagcaccgccgccgtccgatgatcgtcccggtggtcatcgaggcgtag
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