Curtobacterium sp. YC1: I8920_12475
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Entry
I8920_12475 CDS
T10236
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cuy Curtobacterium sp. YC1
Brite
Enzymes [BR:
cuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I8920_12475 (hrpA)
Messenger RNA biogenesis [BR:
cuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I8920_12475 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QQD75624
UniProt:
A0A7T4WJ45
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Position
2654739..2658590
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AA seq
1283 aa
AA seq
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MSPTLPAITYPPELPVSQRRDDIAAAIRDNQVVIVAGATGSGKTTQLPKICLELGREHIG
HTQPRRIAARTIAERVAEELGGGELGGLVGYQVRFTDKVSSETRVKLMTDGILLNEIHFD
RDLKRYDTIIIDEAHERSLTIDFLLGYLKRLLPRRPDLKLIITSATIDPESFSKHFGGAP
IIEVSGRTYPVEVRYRPLVAEDQGDDADDESDSRTGDSGNAADDRDTLQGITDALDELAQ
EDPGDVLVFLSGENEIRDAQDAIEGKRYPGTEVLPLYGRLSAADQHRVFERRSTPGIRRR
VVLATNVAETSLTVPGIKYVVDTGTARISRYSPRAKVQRLPIEAISQASANQRSGRAGRT
SAGIAIRLYSEDDFGRRPEYTDPEILRTNLAAVILQMISLGFGDIESFPFLQPPDSRGVK
DGLDLLRELRAVDKDGRITKSGRQLTRLPIDPRLGRMVLEAGRQGVGREVVAIVSALSIQ
DPRERPLEKRTHADQLHARFADPTSDFLTLLNLWNHLEDKQEELSSSAFRRLCKAEFLNH
LRIREWQDLYRQLSRAAKQVDVRVGQSRSDDGDAVHRSLLSGLLSQIGLRDREKRDYLGS
RNTRFVVFPGSVLAKKQPDAVMAAELVETSRLFARTVGRIDPAWVEPLAGDLLKRTYGEP
HWEKKQGAVVAYERVTLFGVPIVERRRVQYKRVDPEHSRELFIRHALVEGEWDSQQAFDR
DNRRLRRELEQLEERTRRRDILFDDERVFDFYDARIPADITTTRDFEGWWRATRREQPDL
LTMRRSDLLDEDAAEAAQDQQEYPTQWRSGDQRLAIKYRFEPGAQDDGVSVQVPLALLPR
MREEGFDWQVRGLRKELVTALIKSLPKQIRKNVVPAADWAEKIVAELPDDAPTEPTESFR
ATLAKAIQRMTYVPVTESDFDLSRVPAHLLPTWAVVDERGRRVETGKDLSALQTKLKDRT
RQSVASATTKGAGRPGGAARVASAGVGRPLEQSGLSAWPDQDLPQTLDTRQAGGVIRAYP
SLVEEGSGPKATVGVHLLATPSDRAVTMPAGVRRLVMHAVPSPVSYIQSHLTAQEKLALA
ASPYPSTAALFDDVLAAVVDSGIRRAHPDGLVFTKAEFESVRDAVSATVVDTMFTAVSEV
AAVLAAQRSAERALKQANSMSLLAALTDMRQQTERLVFPGFVAVAGLDRLRRIRVYLQGI
EARVQKLLQNPGRDATWMREVTVATDRYTDAGGTFPPAVGAHPELVHARWMLEEFRLSLF
AQELGTAETVSLQRITKALAAAR
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccacgctgcccgccatcacctacccgcccgagctgccggtctcacagcggcgg
gacgacatcgcggccgccatccgggacaaccaggtggtgatcgtcgccggcgccaccggt
tccggcaagacgacccagctgcccaagatctgcctcgagctcgggcgtgagcacatcggg
cacacgcagccccgtcggatcgcggcgcgcacgatcgccgagcgggtggccgaggagctc
ggcggcggcgagctcggcggactcgtcggctaccaggtgcgcttcaccgacaaggtcagc
tccgagacccgcgtgaagctgatgaccgacggcatcctgctcaacgagatccacttcgac
cgcgacctgaagcggtacgacacgatcatcatcgacgaggcgcacgagcggtcgctgacc
atcgacttcctgctcggctacctcaagcgactgctcccccgacgccccgacctcaagctc
atcatcacgagtgcgacgatcgatccggagtccttctcgaagcacttcgggggcgcgccg
atcatcgaggtgtccggccgcacctacccggtcgaggtccggtaccgtccgctcgtcgcc
gaggaccagggcgacgacgccgacgacgagtccgactcccggaccggcgacagcgggaac
gccgccgacgaccgcgacaccctgcaggggatcaccgacgccctcgacgagctggcgcag
gaggacccgggcgacgtcctggtgttcctgtccggcgagaacgagatccgcgacgcgcag
gacgccatcgagggcaagcgctacccgggcaccgaggtcctgccgctgtacgggcggttg
tccgccgccgaccagcaccgggtcttcgagcgccgcagcacgccgggcatccgcaggcgt
gtggtcctggcgaccaacgtcgccgagacctcgctcaccgtgccggggatcaagtacgtc
gtcgacaccggcacggcgcgcatctcgcggtactccccgcgcgccaaggtgcagcgcctg
ccgatcgaggcgatctcgcaggccagtgcgaaccagcgctccgggcgcgcgggacgcacc
agcgccggcatcgccatccggctctactccgaggacgacttcggccgccgccccgagtac
accgaccccgagatcctccgcacgaacctcgccgcggtgatcctgcagatgatctccctc
ggcttcggcgacatcgagtcgttcccgttcctgcagccgccggacagccggggcgtgaag
gacggcctcgacctgctccgcgaactccgtgccgtcgacaaggacggccgcatcacgaag
tccgggcggcagctcacccggctgcccatcgacccgcgactcgggcggatggtgctcgag
gccggtcggcagggcgtcgggcgcgaggtcgtggcgatcgtcagcgccctgagcatccag
gacccgcgggagcgccccctcgagaagcgcacccacgccgaccagctccacgcccggttc
gccgatcccacgagcgacttcctcaccctgctcaacctctggaaccacctcgaggacaag
caggaggaactgtcgtcgagcgcgttccgccggttgtgcaaggcggagttcctcaaccac
ctgcgcatccgcgagtggcaggacctgtaccggcagctctcccgcgccgccaagcaggtc
gacgtgcgggtcgggcagtcccgctccgacgacggcgacgccgtgcaccggtcactcctg
tccgggctcctcagccagatcggtctgcgcgaccgcgagaagcgcgactacctcggttcc
cgcaacacccggttcgtggtgttcccgggcagcgtcctggccaagaagcagcccgacgcc
gtgatggccgccgaactcgtcgagacgagccggctgttcgcgcggacggtgggccgcatc
gaccccgcgtgggtggagccgctcgccggcgacctgctcaagcgcacctacggtgagccg
cactgggagaagaagcagggcgccgtcgtcgcctacgagcgggtgaccctgttcggcgtc
ccgatcgtggagcgccgccgcgtgcagtacaagcgcgtcgaccccgagcactcccgcgag
ctcttcatccggcacgccctcgtcgagggcgagtgggactcgcagcaggcgttcgaccgc
gacaaccgtcgactccggcgcgaactcgaacagctcgaggaacgcacacgccgccgcgac
atcctgttcgacgacgagcgcgtcttcgacttctacgacgcccgcatcccggcggacatc
acgacgacccgcgacttcgagggctggtggcgagccacccgtcgtgagcagccggacctg
ctcaccatgcgccggtcggacctgctggacgaggacgcggcagaggcggcgcaggaccag
caggagtacccgacccagtggcggagcggcgaccagcggctggcgatcaagtaccgcttc
gagccgggcgcccaggacgacggcgtcagcgtgcaggtgcccctcgcgctcctcccccgc
atgcgcgaagaggggttcgactggcaggtccgcgggctgcgcaaggagctcgtcaccgcg
ctcatcaagtcgctgccgaagcagatccgcaagaacgtcgtgcccgccgccgactgggcc
gagaagatcgtcgccgagctgcccgacgatgccccgaccgagccgaccgagtcgttccgc
gccaccctcgccaaggcgatccagcgcatgacctacgtcccggtcaccgagtccgacttc
gacctgtcccgcgtccccgcgcacctgctgccgacgtgggccgtggtcgacgagcgcggc
cgccgggtcgagaccggcaaggacctgtcggccctgcagaccaagctcaaggaccggacc
cggcagagcgtcgcctccgcgacgacgaagggcgcgggccggccaggaggcgcggctcgc
gtcgcgtccgccggcgtcggtcgtcccctggagcagtccggcctcagcgcctggcccgac
caggacctgccgcagaccctcgacaccaggcaggcgggcggcgtcatccgcgcgtacccg
tccctggtcgaggagggctctggtccgaaggcgaccgtcggcgtgcatctcctcgccacc
ccgtcggaccgggcggtgacgatgccggccggagtgcgtcgcctggtgatgcacgcggtg
ccctcccccgtgtcgtacatccagtcgcacctgaccgcgcaggagaagctcgcgctcgcc
gccagcccgtacccgtcgaccgccgccctgttcgacgacgtcctggccgccgtggtcgat
tcgggcatccgccgcgcccaccccgacggtctggtcttcacgaaggccgagttcgagtcc
gtccgcgacgccgtgtcggccaccgtcgtcgacacgatgttcaccgcggtgtccgaggtc
gcagcggtcctggccgcccaacggtcggccgagcgtgcactgaagcaggcgaactccatg
tccctgctcgccgcgctgacggacatgcgccagcagacggagcgcctcgtgttccccggg
ttcgtcgccgtggcgggactcgatcgactccgccgcatccgcgtgtacctgcaaggcatc
gaggcacgcgtgcagaagctcctgcagaaccccgggcgcgacgccacctggatgcgcgag
gtcaccgtggcgaccgaccgctacaccgatgccggcggcaccttcccgcccgcggtcggg
gcgcacccggagctcgtgcacgcacggtggatgctcgaggagttccggctcagcctgttc
gcgcaggagctcgggaccgccgagaccgtctcgctgcagcggatcacgaaggccctggcg
gcggctcgctga
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